Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03088 ATGTCTGACGTCTTCTGCACCGACTGCAAGAGGCAGACGGAGGTCGTCTTCGACCACTCGGCGGGGGACACCGTCTGCTCCGAGTGCGGTCTTGTCTTGGAGTCTCACTCCATCGACGAAACCTCCGAGTGGCGAACCTTCGCCAACGAGTCCGGCGACAACGACCCCGTGCGTGTTGGCGGGCCCACCAACCCGCTTCTCACTGACGGCGGCCTCTCCACCGTCATCGCTAGGCCGAACGGCGCCTCCGGCGAGTTCCTCTCCTCCTCACTCGGCCGCTGGCAGAACCGCGGCTCCAACCCCGACCGCGGACTCATTGTCGCCTTCAAAAGCATCGCCACCATGTCCGATAGGTTGGGACTTGTTGCAACTATCAAGGTATTGCACATTATCAACTTATTTCTTGTTGTGGAGGTGCCATGGCGGGCATTCCTTCAGAAATCATCTACCACGGCATTTGCAATGGCGGCCATGGGACCGCCATTGAACAAGGATCGGGCTAATGAGATATATAAACGAGTTGAAGACCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAGGACAAGCCTCGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCTTCCAAGAAGGACATTGGCCGAGCGAAAGAATACGTAGTGAAACAACTGGGTTTGGAGAAGGGCCAATCTGTAGAGATGGGAACAATACACGCTGGGGACTTTATGAGGCGTTTTTGTTCTAATCTCGGTATGAATAATCAAGCTGTTAAAGCCGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGAAGCCCCATATCAATTGCTGCAGCAGTTATATACATTATAACTCAGCTTTCTGATGATAAGAAACCTCTCAAAGATATATCAGTTGCTACAGGAGTTGCTGAAGGAACCATTAGGAACTCGTACAAGGATCTTCATCCTTATGTTTTCAAAATAATACCAAACTGGTATGCAAAGGAAGAGGATTTGAAGAACTTAAGCAGCCCATAG 1053 0.4986 MSDVFCTDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIARPNGASGEFLSSSLGRWQNRGSNPDRGLIVAFKSIATMSDRLGLVATIKVLHIINLFLVVEVPWRAFLQKSSTTAFAMAAMGPPLNKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGASKKDIGRAKEYVVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLHPYVFKIIPNWYAKEEDLKNLSSP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03088 350 Gene3D - 5 158 - -
Vimu6g03088 350 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Vimu6g03088 350 Gene3D - 160 240 - -
Vimu6g03088 350 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 347 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 FunFam Transcription initiation factor IIB 246 349 - -
Vimu6g03088 350 SMART cyclin_7 143 230 IPR013763 -
Vimu6g03088 350 SMART cyclin_7 249 328 IPR013763 -
Vimu6g03088 350 SUPERFAMILY Cyclin-like 245 347 IPR036915 -
Vimu6g03088 350 CDD CYCLIN_TFIIB_rpt1 108 233 - -
Vimu6g03088 350 SUPERFAMILY Cyclin-like 162 234 IPR036915 -
Vimu6g03088 350 Pfam TFIIB zinc-binding 5 47 IPR013137 -
Vimu6g03088 350 ProSitePatterns Transcription factor TFIIB repeat signature. 182 197 IPR023486 -
Vimu6g03088 350 Gene3D - 246 349 - -
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 250 268 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 190 209 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 314 328 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 217 232 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 PRINTS Transcription initiation factor IIB signature 282 298 IPR000812 GO:0006352|GO:0070897
Vimu6g03088 350 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Vimu6g03088 350 Pfam Transcription factor TFIIB repeat 164 214 IPR013150 GO:0017025
Vimu6g03088 350 Pfam Transcription factor TFIIB repeat 242 326 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03088 Vimu-Chr6 27234103 27237186 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03088 K03124 - csav:115709742 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03088 6 27234103 27237186 Vimu6g03088 6 27234103 27237186 ECH
Vimu6g03088 6 27234103 27237186 Vimu3g00434 3 4280310 4284364 PCT