Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00434 ATGTCAGACGCGTTCTGCAGCGACTGCAAGAAGCAGACGGAGGTTGTGTTCGACCACTCCGCCGGCGATACCGTCTGCTCCGAGTGCGGCCTCGTCCTCGAGTCCCACTCCATCGACGAGACCTCCGAGTGGCGTACCTTCGCCAACGAGTCGGGCGACAACGACCCCAACCGTGTCGGCGGTCCCTCTAACCCTCTTCTCACCGACGGCGGCCTGTCTACCGTCATCGCCAAGCCCAACGGCTCTGGCGGCGAGTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGGTTCCAACCCCGATCGCGCCCTCATCCTGGCTTTCAAGACCATCGCCACCATGTCCGACAGGTTGGGACTGGTTGCGACCATCAAGGATCGGGCTAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAGGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTGCCGACAAGAAGACAAACCTCGTACTGTTAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTAAAACAGCTGGGTTTGGAGAATGGTCAGTCTGTGGAGATGGGTACAATACATGCAGGGGACTTTATGAGGCGATTCTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATATATCATAACTCAGCTTTCTGATGATAAGAAGCCTCTTAAAGATATATCAATTGCCACAGGCGTTGCTGAAGGAACGATTAGGAACTCCTACAAGGATCTTTACCCCCATGTTTCAAAAATAATACCAAATTGGTATGCGAAGGAGGAGGATTTAAGGAGCCTTTGCAGCCCTTGA 939 0.5048 MSDAFCSDCKKQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGSGGEFLSSSLGRWQNRGSNPDRALILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLRSLCSP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00434 312 SMART cyclin_7 110 192 IPR013763 -
Vimu3g00434 312 SMART cyclin_7 211 290 IPR013763 -
Vimu3g00434 312 CDD CYCLIN_TFIIB_rpt1 108 195 - -
Vimu3g00434 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Vimu3g00434 312 SUPERFAMILY Cyclin-like 207 306 IPR036915 -
Vimu3g00434 312 FunFam transcription initiation factor IIB 91 197 - -
Vimu3g00434 312 Gene3D - 5 193 - -
Vimu3g00434 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Vimu3g00434 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 309 IPR000812 GO:0006352|GO:0070897
Vimu3g00434 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Vimu3g00434 312 Gene3D - 208 311 - -
Vimu3g00434 312 FunFam Transcription initiation factor IIB 5 193 - -
Vimu3g00434 312 FunFam Transcription initiation factor IIB 208 311 - -
Vimu3g00434 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Vimu3g00434 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Vimu3g00434 312 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00434 Vimu-Chr3 4280310 4284364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00434 K03124 - csav:115709742 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00434 3 4280310 4284364 Vimu3g00434 3 4280310 4284364 ECH
Vimu6g03088 6 27234103 27237186 Vimu3g00434 3 4280310 4284364 PCT