Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03065 ATGTCTAGTGCTACAAAAGTGTTGGATCCAGCATTCCAGGGAGTTGGTCAAAAAGTAGGAACTGAAATATGGAGGATTGAGAATTTTCAACCAGTTCCATTGCCCAGATCTGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAACACAAGGCAAAGGAGGGGCTTATTTTTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAAGCTGGAACAGCAGCCATTAAAACTGTTGAACTTGATGCATCTCTTGGAGGACGTGCAGTGCAATACAGGGAAATTCAAGGGCATGAATCAGACAAATTTTTGTCATACTTTAAGCCATGTATAATACCATTAGAGGGTGGTGTCGCGTCTGGATTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTCCCTTTCGCACGGTCTTCGCTGAATCATGACGATGTGTTCATCCTAGATACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAAGGAAAATGCGATGTTGCAATTGTTGATGATGGCAAGCTGGATACTGAGTCAGATTCAGGTGAATTCTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTGCTGAGGATGATATTGTCCTAGAGGCCATTCCTGCTCAACTTTATAGTATTGCTGATGGTGAGGTCAAGCCTGTGGAAGGTGAACTTTCAAAATCACTGTTGGAGAACTACAAATGCTATCTATTGGACTGTGGCTCTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAAAGAAAAGCAGCATGTCAAGCAGCCGAGGAGTTTGTTGCAAGTCAAAAAAGGCCAAAATCTACAAGGATTACCAGAATTATTCAAGGATATGAAACACATTCATTTAAGTCGAACTTTGACTCTTGGCCATCAGGGTCTGCTACTACCAGTGCTGATGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAACAACAAGGTATGGGTGTGAAAGGCGCGGCAAAAAGTACCCCAGTTGTTGAAGATATTCCACCTTTGCTTGAAGGAGGCGGAAAGATGGAGGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAAGATATTGGTAAATTCTATAGTGGAGATTGTTACATAGTGCTCTACACTTATCACTCTAGCGAGAGGAAGGAAGACTACTATTTGTGCAGTTGGTTTGGAAAAGACAGTGTCGAGGAGGACCAAAGGATGGCTATTCGATTGGCTACTACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGATGGTAAAGAGCCACCACAGTTTATTGCTCTTTTCCAACCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCTGGTTACAAAAAATTTATAGCAGATAAAGGCTTGCCAGATGAGACATACACAGCAGACAGTGTTGCACTTATTCGAATTTCAGGAACATCTCCTCATAATAATAAAGTGGTGCAAGTAGATGCAATTGCAGCATCGTTGAATTCTACCGAATGTTTTGTTTTGCAATCTGGCTCAGCTGTTTTCACTTGGCATGGGAATCAATGCTCCCTAGAGCAGCAGCAGCTTGCAACAAAAGTTGCTGAATTTTTAAAGGTGGAGGAGATTTACAACTTTTCCCAAGATGATTTGTTAACAGAGGATATCCTCATCCTTGACACGCACGCCGAAGTTTTCGTTTGGATTGGTCAGTGTGTGGATCCAAAGGAAAAGCAAAATGCATTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTCTGGATGGACTATCTCCTCAAGTTCCACTATATAAAGTAACAGAAGGGAATGAACCGTGCTTTTTCACTGCATATTTTTCTTGGGATCATGCAAAAGCTTTGGAAAAGTCTAATGGGTCCAGTCAAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAACAGCGCATTTAAGTCATCTCCTGAGGCAGCAGCTAGTGCGGATAAGTTAAACGGGCTAAATCAAGGAGGGCCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAGCCAAAATTTATACACCTAGGTCTTCTGGAAGAAGTCAGGGATCACAGAGAGCAGCAGCAGTAGCTGCTCTTTCTTCAGTTCTTACTGCTGAAAAGAAGAAAACTTCACCCGAAACTTCTCCAGTGGCAAGCACTAGTCCTGTTGTGGAAAATAGTAACTTTGGTGAGAAACATGGCTCAATTCCAGATACTAAAAGTGAGAGTGCCCCTTCTGAAACGGATGTTGTTGAAGAAGTTGTTCCTCAAGTCAAGGAGACAGAAGAATCAGCCACTGAAACTGGCACAAACGGGGATTCAGAACCAAAACAAGAAAATGTGGATAATGGAGGAAATGACAGTGAAAATAATCAAAATGTCTTCAGTTATGAGCAACTAAAGACTAAATCTGGTAGTGTTGTGTCTGGAATTGATCTTAAACGGAGAGAGGCATATCTGTCAGACAAGGAGTTCGAAACTGTATTTGGAATGAGCAAAGAGGCATTCACTAAGTTACCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATCTGTTCTAG 2715 0.4195 MSSATKVLDPAFQGVGQKVGTEIWRIENFQPVPLPRSEYGKFYMGDSYIILQTTQGKGGAYFYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQYREIQGHESDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETRLYVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVIAEDDIVLEAIPAQLYSIADGEVKPVEGELSKSLLENYKCYLLDCGSEVFVWVGRVTQVEERKAACQAAEEFVASQKRPKSTRITRIIQGYETHSFKSNFDSWPSGSATTSADEGRGKVAALLKQQGMGVKGAAKSTPVVEDIPPLLEGGGKMEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCSWFGKDSVEEDQRMAIRLATTMFNSLKGRPVQGRIFDGKEPPQFIALFQPMVVLKGGLSSGYKKFIADKGLPDETYTADSVALIRISGTSPHNNKVVQVDAIAASLNSTECFVLQSGSAVFTWHGNQCSLEQQQLATKVAEFLKVEEIYNFSQDDLLTEDILILDTHAEVFVWIGQCVDPKEKQNAFEIAQKYIDKAASLDGLSPQVPLYKVTEGNEPCFFTAYFSWDHAKALEKSNGSSQGGPRQRAEALAALNSAFKSSPEAAASADKLNGLNQGGPRQRAEALAALNSAFNSSSGAKIYTPRSSGRSQGSQRAAAVAALSSVLTAEKKKTSPETSPVASTSPVVENSNFGEKHGSIPDTKSESAPSETDVVEEVVPQVKETEESATETGTNGDSEPKQENVDNGGNDSENNQNVFSYEQLKTKSGSVVSGIDLKRREAYLSDKEFETVFGMSKEAFTKLPRWKQDMLKRKVDLF 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03065 904 CDD gelsolin_S6_like 569 655 - -
Vimu6g03065 904 FunFam Villin-4 373 510 - -
Vimu6g03065 904 SUPERFAMILY VHP, Villin headpiece domain 831 904 IPR036886 GO:0003779|GO:0007010
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 9 142 - -
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 371 518 - -
Vimu6g03065 904 CDD gelsolin_S1_like 12 124 - -
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 211 333 - -
Vimu6g03065 904 Gene3D Severin 236 346 IPR029006 -
Vimu6g03065 904 Gene3D Villin headpiece domain 827 904 IPR036886 GO:0003779|GO:0007010
Vimu6g03065 904 CDD gelsolin_S4_like 374 475 - -
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 498 570 - -
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 571 655 - -
Vimu6g03065 904 Gene3D Severin 133 234 IPR029006 -
Vimu6g03065 904 Pfam Villin headpiece domain 869 904 IPR003128 GO:0003779|GO:0007010
Vimu6g03065 904 SUPERFAMILY Actin depolymerizing proteins 139 225 - -
Vimu6g03065 904 PRINTS Gelsolin family signature 399 415 IPR007122 GO:0051015
Vimu6g03065 904 PRINTS Gelsolin family signature 521 541 IPR007122 GO:0051015
Vimu6g03065 904 PRINTS Gelsolin family signature 458 478 IPR007122 GO:0051015
Vimu6g03065 904 PRINTS Gelsolin family signature 311 332 IPR007122 GO:0051015
Vimu6g03065 904 PRINTS Gelsolin family signature 425 443 IPR007122 GO:0051015
Vimu6g03065 904 SMART VHP_1 869 904 IPR003128 GO:0003779|GO:0007010
Vimu6g03065 904 MobiDBLite consensus disorder prediction 754 844 - -
Vimu6g03065 904 Pfam Gelsolin repeat 520 571 IPR007123 -
Vimu6g03065 904 Pfam Gelsolin repeat 574 648 IPR007123 -
Vimu6g03065 904 Pfam Gelsolin repeat 29 111 IPR007123 -
Vimu6g03065 904 Pfam Gelsolin repeat 252 325 IPR007123 -
Vimu6g03065 904 Pfam Gelsolin repeat 143 205 IPR007123 -
Vimu6g03065 904 Pfam Gelsolin repeat 393 472 IPR007123 -
Vimu6g03065 904 Gene3D Severin 5 132 IPR029006 -
Vimu6g03065 904 SMART VILL_6 239 332 IPR007122 GO:0051015
Vimu6g03065 904 SMART VILL_6 127 222 IPR007122 GO:0051015
Vimu6g03065 904 SMART VILL_6 380 478 IPR007122 GO:0051015
Vimu6g03065 904 SMART VILL_6 19 117 IPR007122 GO:0051015
Vimu6g03065 904 SMART VILL_6 557 654 IPR007122 GO:0051015
Vimu6g03065 904 ProSiteProfiles Headpiece (HP) domain profile. 839 904 IPR003128 GO:0003779|GO:0007010
Vimu6g03065 904 CDD gelsolin_S3_like 242 331 - -
Vimu6g03065 904 MobiDBLite consensus disorder prediction 754 794 - -
Vimu6g03065 904 Gene3D Severin 511 572 IPR029006 -
Vimu6g03065 904 FunFam Villin-4 236 342 - -
Vimu6g03065 904 MobiDBLite consensus disorder prediction 811 844 - -
Vimu6g03065 904 FunFam Gelsolin 6 131 - -
Vimu6g03065 904 Gene3D Severin 377 510 IPR029006 -
Vimu6g03065 904 Gene3D Severin 573 666 IPR029006 -
Vimu6g03065 904 PANTHER VILLIN 4 569 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03065 Vimu-Chr6 26972725 26982185 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03065 - - pvu:PHAVU_001G131700g 1649.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03065 6 26972725 26982185 Vimu3g00421 3 4107568 4119448 PCT