Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00421 ATGGGAGATTCTTATATCATCTTGCAGACAACTCAAGGCAAAGGTGGCACTTATTTTTATGATTTGCATTTCTGGATTGGAAAAGATACAAGTCAGGATGAGGCTGGAACTGCAGCCATTAAAACTGTTGAACTAGATGCTGCTCTTGGAGGGCGTGCAGTGCAGCACAGGGAAATCCAAGGACATGAATCTGACAAGTTTTTGTCATACTTTAAACCATGTATAATACCATTAGCGGGTGGTGTGGCATCTGGGTTTACAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTATATGTATGCAAAGGGAAAAGAGTTGTTAGATTGAGACAGATCCCTTTTGCAAGGTCTTCATTGAATCATGATGATGTATTCATAGTCGACACTGAGAATAAGATATTCCAGTTCAATGGTGCAAATTCCAATATTCAGGAAAGAGCCAAATCTTTGGAAGTTATACAATTCCTTAAAGAAAAATATCATAAAGGGAAATGTGATGTTGCAATTGTTGATGATGGTAAGTTAGACACAGAGTCGGACTCAGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATCAGTGAGGATGATGTTATTCCAGAGTCAATTCCTGCTCAGCTTTATAGTATTGCTAATGGGGAGGTTACCCCCGTGGAAGGTGAACTGTCTAAATCATTGTTGGAAAACAACAAATGCTATCTATTGGACTGTGGTGCTGAGATATTTGTCTGGGTTGGTCGGGTAACTCAAGTAGAAGAACGAAAAGCAGCCTGCCAAGCCGTTGAGGAGTTTGTTGCAAGCCAACGTAGGCCAAAATCTACAAGGATAACCAGGATTATTCAAGGTTACGAAACACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCTGGATCTGCTAATACCAATGCAGAGGAAGGAAGAGGGAAAGTTGCAGCACTGCTTAAGCAACAAGGTATGGGTGTCAAAGGAATGGCCAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGGAAGATAGAGGTATGGCGAATTAATGGAGATGCCAAGACTGCATTGCCAAAGGAGGAGATTGGTAAATTTTATACTGGAGACTGTTATATTGTACTGTACACATACCATACCGGTGAGAGGAAAGAAGACTTATTTTTGTGCTCTTGGTTTGGGAAAGACAGCATCAAGGAGGACCAAACAACTGCTACTCGGTTGGCCAACACAATGTGTACCTCATTAAAGGGTAGACCTGTACAGGGTCGCATATTTGAAGGCAAAGAGCCACCACAATTTGTTGCTATTTTCCAACCAATGGTGGTGCTTAAGGGAGGATTGAGCTCCGGGTACAAGAAATTATTAGCAGACAAAGGTGAATCAGATGAGACATATACAGCAGAGTGTATTGCACTTATTCGAATCTGTGGAACTTCTATTTATAACAATAAATCTTTACAAGTTGATGCGGTGCCAGCATCGTTGAATTCTGCTGAGAGTTTTGTCCTGCAGTCTGGCTCTACAGTTTTTATCTGGCATGGGAATCAGTGTTCTTTTGAGCAGCAACAGCTAGCAGCAAAGGTTGCTGAATTTTTAAGGCCTGGAGTTACTCTAAAGCATGCTAAAGAAGGAACAGAAAGCTCAGCTTTCTGGTCTGCACTAGGAGGAAAACAAGCTTACACCAGCAAGAAAGTTGTTAACGAAGTTGTCAGAGATCCACATTTGTTCACCATATCATTTTATAAAGGTAACCTTTTTTTGTCATTTTTATTGTATTCTACCCTGCAGGTAGAGGAGGTTTACAACTTCTCTCAAGATGACCTGCTACCAGAGGATATCCTTGTACTTGACACACACGCAGAAGTGTTTATTTGGGTCGGTAATTCTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGGTCAGAAATACATAGATATGGCTGCATCTCTGGAGGGACTATCTCCACATGTACCAGTATATAAAGTAACAGAGGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTGTGGTTCAGGGGAACTCATTTCAGAAAAAGGTGGCGTTACTCTTTGGAATTGGCCATGCTGTCGAGGATAAGTCAAATGGATCAAGTCTGGGGGGACCAAGACAAAGAGCTGAAGCATTGGCTGCTTTGAACAATGCATTTAGTTCATCATCTGAGAAAGCATCCAGTATGACACAAGATAGATTGAATGGGTTAAGCCAAGGAGGACCAAGACAAAGGGCAGAAGCTTTAGCTGCTTTGAACTCTGCATTTAATTCATCATCTGGTACAAAACCTGTAACTCCTCCTAAGGCATCTGGAAAAGGTCAAGGATCACAAAGAGCAGCAGCAGTGGCTGCTCTTTCATCAGTTCTTACTGCTGAAAAGAAGAAAATATCACCCGATGGTTCTCCTGTGGCTAGCAGTAGTCCTCTCACTGAAAATAGCCCCACTGAAGCTAAAAGTGAATCCTCTGAAGTTGAAGAAGTTGCAGAGGCCAAGGAAACAACAGAGGAACTTGCCCCTGAAACTGCTAGCAATGAGGATATGGAACCAAAACAAGAAAACGAGGAGGAGTCGAATGGTAGTCAAAGGACGTTTACTTATGAACAATTAAAGACTAGATCTGGTATTGATGTGGCTGGAATTGATCTTAATCGGAGGGAGGCCTATCTATCGGAGGAGGACTTCAACACTATATTTGGAATGGAAAAAGAGGCATTTTATAAGTTACCAAGATGGAAGCAAGACATGCTGAAAAAGAAATTCGAATTGTTCTAG 2832 0.4153 MGDSYIILQTTQGKGGTYFYDLHFWIGKDTSQDEAGTAAIKTVELDAALGGRAVQHREIQGHESDKFLSYFKPCIIPLAGGVASGFTKPEEEEFETRLYVCKGKRVVRLRQIPFARSSLNHDDVFIVDTENKIFQFNGANSNIQERAKSLEVIQFLKEKYHKGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDVIPESIPAQLYSIANGEVTPVEGELSKSLLENNKCYLLDCGAEIFVWVGRVTQVEERKAACQAVEEFVASQRRPKSTRITRIIQGYETHSFKSNFDSWPSGSANTNAEEGRGKVAALLKQQGMGVKGMAKSTPVNEEIPPLLEGGGKIEVWRINGDAKTALPKEEIGKFYTGDCYIVLYTYHTGERKEDLFLCSWFGKDSIKEDQTTATRLANTMCTSLKGRPVQGRIFEGKEPPQFVAIFQPMVVLKGGLSSGYKKLLADKGESDETYTAECIALIRICGTSIYNNKSLQVDAVPASLNSAESFVLQSGSTVFIWHGNQCSFEQQQLAAKVAEFLRPGVTLKHAKEGTESSAFWSALGGKQAYTSKKVVNEVVRDPHLFTISFYKGNLFLSFLLYSTLQVEEVYNFSQDDLLPEDILVLDTHAEVFIWVGNSVDPKEKQNAFEIGQKYIDMAASLEGLSPHVPVYKVTEGNEPCFFTTYFSWDHAKAVVQGNSFQKKVALLFGIGHAVEDKSNGSSLGGPRQRAEALAALNNAFSSSSEKASSMTQDRLNGLSQGGPRQRAEALAALNSAFNSSSGTKPVTPPKASGKGQGSQRAAAVAALSSVLTAEKKKISPDGSPVASSSPLTENSPTEAKSESSEVEEVAEAKETTEELAPETASNEDMEPKQENEEESNGSQRTFTYEQLKTRSGIDVAGIDLNRREAYLSEEDFNTIFGMEKEAFYKLPRWKQDMLKKKFELF 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00421 943 PANTHER VILLIN 1 933 IPR007122 GO:0051015
Vimu3g00421 943 SMART VHP_1 908 943 IPR003128 GO:0003779|GO:0007010
Vimu3g00421 943 ProSiteProfiles Headpiece (HP) domain profile. 878 943 IPR003128 GO:0003779|GO:0007010
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 180 302 - -
Vimu3g00421 943 Gene3D Severin 574 702 IPR029006 -
Vimu3g00421 943 Gene3D Severin 90 203 IPR029006 -
Vimu3g00421 943 Gene3D Severin 1 89 IPR029006 -
Vimu3g00421 943 Gene3D Villin headpiece domain 864 943 IPR036886 GO:0003779|GO:0007010
Vimu3g00421 943 FunFam Villin-like 1 88 204 - -
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 340 485 - -
Vimu3g00421 943 MobiDBLite consensus disorder prediction 741 798 - -
Vimu3g00421 943 Gene3D Severin 480 570 IPR029006 -
Vimu3g00421 943 FunFam Gelsolin 476 570 - -
Vimu3g00421 943 CDD gelsolin_S6_like 579 687 - -
Vimu3g00421 943 FunFam Villin-4 205 311 - -
Vimu3g00421 943 SUPERFAMILY VHP, Villin headpiece domain 875 943 IPR036886 GO:0003779|GO:0007010
Vimu3g00421 943 PRINTS Gelsolin family signature 368 384 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 490 510 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 394 412 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 641 660 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 612 634 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 280 301 IPR007122 GO:0051015
Vimu3g00421 943 PRINTS Gelsolin family signature 427 447 IPR007122 GO:0051015
Vimu3g00421 943 CDD gelsolin_S2_like 95 189 - -
Vimu3g00421 943 CDD gelsolin_S5_like 477 565 - -
Vimu3g00421 943 Gene3D Severin 345 479 IPR029006 -
Vimu3g00421 943 MobiDBLite consensus disorder prediction 838 877 - -
Vimu3g00421 943 MobiDBLite consensus disorder prediction 811 885 - -
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 91 195 - -
Vimu3g00421 943 MobiDBLite consensus disorder prediction 741 757 - -
Vimu3g00421 943 CDD gelsolin_S3_like 211 300 - -
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 2 105 - -
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 553 685 - -
Vimu3g00421 943 Pfam Gelsolin repeat 2 68 IPR007123 -
Vimu3g00421 943 Pfam Gelsolin repeat 110 174 IPR007123 -
Vimu3g00421 943 Pfam Gelsolin repeat 223 294 IPR007123 -
Vimu3g00421 943 Pfam Gelsolin repeat 606 680 IPR007123 -
Vimu3g00421 943 Pfam Gelsolin repeat 500 540 IPR007123 -
Vimu3g00421 943 Pfam Gelsolin repeat 368 440 IPR007123 -
Vimu3g00421 943 CDD gelsolin_S1_like 2 81 - -
Vimu3g00421 943 Pfam Villin headpiece domain 908 943 IPR003128 GO:0003779|GO:0007010
Vimu3g00421 943 MobiDBLite consensus disorder prediction 820 837 - -
Vimu3g00421 943 MobiDBLite consensus disorder prediction 770 785 - -
Vimu3g00421 943 SUPERFAMILY Actin depolymerizing proteins 468 569 - -
Vimu3g00421 943 Gene3D Severin 204 316 IPR029006 -
Vimu3g00421 943 SMART VILL_6 209 301 IPR007122 GO:0051015
Vimu3g00421 943 SMART VILL_6 349 447 IPR007122 GO:0051015
Vimu3g00421 943 SMART VILL_6 590 686 IPR007122 GO:0051015
Vimu3g00421 943 SMART VILL_6 477 564 IPR007122 GO:0051015
Vimu3g00421 943 SMART VILL_6 94 191 IPR007122 GO:0051015
Vimu3g00421 943 SMART VILL_6 6 74 IPR007122 GO:0051015
Vimu3g00421 943 CDD gelsolin_S4_like 343 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00421 Vimu-Chr3 4107568 4119448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00421 - - gmx:100788765 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00421 3 4107568 4119448 Vimu3g00421 3 4107568 4119448 ECH
Vimu6g03065 6 26972725 26982185 Vimu3g00421 3 4107568 4119448 PCT