Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03029 ATGGCCCTCCTCAAACAGCTCTTCCTCTCCTTCACCATTTTCATCATTTCTTTTGTTTTTTGTTATGGCAGCTTGCAAGAGGACCCACTCACCAGTATATATGTTCATCATTCACCTTCCGTTGATGATGGTGGGACATTATTCAAGAACTTCAACAAGCAAAGCGCAAATGTTTTGAGCTTAAACAGGTTTGAGAAGCCTAGCTCCCTTAAAATGGTTAATGTCAATGATTATGGAGCTAAGAGGAATGGTGATGATGACTCAGAGGCTTTCAAAAAGGCTTGGGATGAGGTATGTACTTCTGGGGAAGCAATTCTTGTGGTGCCTAAGAACAATTATCTTCTCAAACCAATAAGATTCTCAGGCCCTTGCAAACCTAACATTGAAGTCCAGATTTCTGGAACACTTGAAGCAGCAGATGACCCATCAGATTACGAGGAAGACAGCACACACTGGCTTGTGTTTGACAAAATTAAGAACCTGTATGTTTATGGTGGTGGAACCCTCGATGGAAACGGCAAATCTTGCAAGGATGCTCCAACAGCTCTGACTTTCGATAGTTGTGAGGACTTGACAGTTGAGAACTTGAACATAGAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGCCTTAACGTGATTGCACCAGAGGATAGTCCCAACACCGATGGGATTCATGTCACGAAAACAAAGAACATCCAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACGAACATTACATGTGGACCGGGACATGGTATCAGCATTGGAAGCTTAGGTGCAGGAAAATCCAAGGACATTGTTTCAGGAATAAAAGTGAACGGAGCCAAGATTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCAAGTTTCAGAACATTGAGATGACCAACGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAAAGGCCATGCCAAAAAGCGGGCTCGGAGAAATCCGCTGTAGAAATCAAGAATGTGGTGTACGAGAACATAAGTGGTACAAGTGCTTCTGACGTAGCTGTGAAGTTTGACTGCAGTGAGAAATTTCCGTGCCAGAAGATAAAATTGCAGAACATAGACCTTGCATGTGAAGGAGGAGATGATGCTGAGGCTCGGTGTAACAATGTTGATAAGCTATCTTACATAGGACACGTTAAGCCTCGTTGCAGTAAAGAATAA 1299 0.418 MALLKQLFLSFTIFIISFVFCYGSLQEDPLTSIYVHHSPSVDDGGTLFKNFNKQSANVLSLNRFEKPSSLKMVNVNDYGAKRNGDDDSEAFKKAWDEVCTSGEAILVVPKNNYLLKPIRFSGPCKPNIEVQISGTLEAADDPSDYEEDSTHWLVFDKIKNLYVYGGGTLDGNGKSCKDAPTALTFDSCEDLTVENLNIENAQQIHVSFQDSENVKVSGLNVIAPEDSPNTDGIHVTKTKNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKDIVSGIKVNGAKIFGTKNGVRIKTWQGGSGSASDIKFQNIEMTNVTNPIIINQNYCDKKKRPCQKAGSEKSAVEIKNVVYENISGTSASDVAVKFDCSEKFPCQKIKLQNIDLACEGGDDAEARCNNVDKLSYIGHVKPRCSKE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03029 432 ProSitePatterns Polygalacturonase active site. 268 281 IPR000743 GO:0004650|GO:0005975
Vimu6g03029 432 SUPERFAMILY Pectin lyase-like 70 429 IPR011050 -
Vimu6g03029 432 Gene3D - 55 429 IPR012334 -
Vimu6g03029 432 FunFam Polygalacturonase QRT2 58 430 - -
Vimu6g03029 432 PANTHER - 71 416 - -
Vimu6g03029 432 Pfam Glycosyl hydrolases family 28 105 418 IPR000743 GO:0004650|GO:0005975
Vimu6g03029 432 SMART pbh1 238 259 IPR006626 -
Vimu6g03029 432 SMART pbh1 291 312 IPR006626 -
Vimu6g03029 432 SMART pbh1 188 208 IPR006626 -
Vimu6g03029 432 SMART pbh1 320 341 IPR006626 -
Vimu6g03029 432 SMART pbh1 211 237 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03029 Vimu-Chr6 26765557 26769425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03029 4 430 Glycoside Hydrolase AT3G07970 47.416 7.09e-134 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03029 K01184 - gmx:100797601 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03029 6 26765557 26769425 Vimu6g03029 6 26765557 26769425 ECH
Vimu3g00411 3 3970930 3974518 Vimu6g03029 6 26765557 26769425 PCT