Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00411 ATGGCCCTCCCAATACAACACCATCTCCTTTTGTTCCTTGTTGCCATGTTGGTTCCTTTTGCTGATAGCACAGTGCCAGAGGACCCAATTAGGTTATTTCATGAGGGTGACAAGAACTTCATCATGCAGAGTACAAATGTTTTCAACTTTAAGAGTTTTGGCAAATTGGCTCAAATTTCTTCTTCCCTAAAAATGGTTAACGTCAATGATTATGGAGCTCAAGGAGATGGTAAAAGTGATGACACTCTGGCATTCGAGAAAGCTTGGGAAGAAGCATGTTCATATGAGGGAGCAGTTTTTGTGGTGCCGCAGAAAAATTATCTACTCAAGCCAATCACATTTTCTGGCCCTTGCAAATCCAACATCGCAGTACAGATCTCTGGAACCCTTGTAGCATCAGATAATCCAGCAGATTACAGTGAAGACCGCTCACACTGGCTTATGTTCCGCAGTGTTCAGAATCTATCAGTTAATGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAACGAACCCTAAGCTTCCTTGCACGAAGGCCCCTACGGCGTTGCATTTCTACCAGTGCAACAACTTAACAGTTGAGGATTTGACGATAAAGAATGGGCAACAGATGCTTGTGTCATTTGAAAGATCTCAGAATGTTATAGCTTCTGGTCTCACTGTGACAGCACCGGAGGACAGCCCAAACACTGATGGAGTTCACATTACAAACACTCAAAACATCCAAATCTCCAACACGGTTATAGGAACTGGCGATGATTGTATATCAATAGAAAATGGATCCATGAATGTGCAAGCCACAAAAATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGTCTGGGAATTCCAAGGATTTTGTTTCAGGAGTAAATGTAAACGGAGCTAAATTTTCTGGAACTACAAATGGAGTAAGAATTAAAACATGGCAGGGAGGTTCAGGAAGTGCAAGTGACATCAAGTTTCAGAACATTGAAATGGACAAAGAATCTGCAGTTGAGATTAGGAATGTGTTATACAAAAACATAAAAGGAACAAGTGCTTCTGATGTGGGTGTGCAATTTGAGTGCAGCGAGACGTTTCCATGCAAAGGGATAGTGTTGGAGGACATAGAGCTTGAACTTGAAGATGGAGAAGGGGCCAAAGCTTCATGCAACAGTGTTCAATTGTCCTACAGAGGAGATGTTAACCCTCAATGCCCATAG 1236 0.4272 MALPIQHHLLLFLVAMLVPFADSTVPEDPIRLFHEGDKNFIMQSTNVFNFKSFGKLAQISSSLKMVNVNDYGAQGDGKSDDTLAFEKAWEEACSYEGAVFVVPQKNYLLKPITFSGPCKSNIAVQISGTLVASDNPADYSEDRSHWLMFRSVQNLSVNGGGTIDGNGNIWWQNSCKTNPKLPCTKAPTALHFYQCNNLTVEDLTIKNGQQMLVSFERSQNVIASGLTVTAPEDSPNTDGVHITNTQNIQISNTVIGTGDDCISIENGSMNVQATKITCGPGHGISIGSLGSGNSKDFVSGVNVNGAKFSGTTNGVRIKTWQGGSGSASDIKFQNIEMDKESAVEIRNVLYKNIKGTSASDVGVQFECSETFPCKGIVLEDIELELEDGEGAKASCNSVQLSYRGDVNPQCP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00411 411 PANTHER - 64 396 - -
Vimu3g00411 411 SUPERFAMILY Pectin lyase-like 62 410 IPR011050 -
Vimu3g00411 411 ProSitePatterns Polygalacturonase active site. 275 288 IPR000743 GO:0004650|GO:0005975
Vimu3g00411 411 SMART pbh1 195 244 IPR006626 -
Vimu3g00411 411 SMART pbh1 245 266 IPR006626 -
Vimu3g00411 411 SMART pbh1 298 319 IPR006626 -
Vimu3g00411 411 Pfam Glycosyl hydrolases family 28 99 339 IPR000743 GO:0004650|GO:0005975
Vimu3g00411 411 Pfam Glycosyl hydrolases family 28 340 399 IPR000743 GO:0004650|GO:0005975
Vimu3g00411 411 Gene3D - 55 407 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00411 Vimu-Chr3 3970930 3974518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00411 7 410 Glycoside Hydrolase AT3G57510 49.654 1.72e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00411 K01184 - gmx:100777940 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00411 3 3970930 3974518 Vimu3g00411 3 3970930 3974518 ECH
Vimu3g00411 3 3970930 3974518 Vimu6g03029 6 26765557 26769425 PCT