Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03028 ATGACGGTGCTAAAGACAACACCAACGCAGTTCCCTACGTGGATTCCTCCATTCCGTGAACCACTTGTGAAGTGTTCGAAAATGACTGTCACTCCTAAGATCTCCGTCAACGATAAGAAATTGGTTGTTCATGGCAAGACCATATTAACCGGAGTACCGGACAACATTGTGCTGACTCCAGGATCTGGAAGTGGCCTAGTGACTGGTGCTTTTGTTGGTGCTACTGCTTCCCACAGCAAAAGTCTCCATGTCTTTCCAATGGGTGTCTTGGAGGAGCTCCGGTTCATGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCACTGGAGACACAGTTCATGCTCATTGAGAGCAAAGAGAGTGAAGTGGATGGAGAGAATTCTCCAACCATCTACACTGTCTTTCTTCCTCTTCTCGAAGGTCCATTCCGAGCTGTTCTTCAAGGCAATGACAAGAATGAGATAGAGATTTGCCTCGAGAGTGGGGATAACGCGGTTGAGACTGATCAAGGCCTTCACCTAGTTTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCAGTGAAGGCTGTGGAAAAACACATGCAAACTTTTCTTCACCGTGAGAAGAAAAAGTTACCCTCTTTTCTTGACTGGTTTGGTTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGAAGGCCTGAAAAGAACACTGAAATTTGTTCAATATGATTACAGTCTATCTGCGGGAGCTACACCACCACGGTTCCTAATCATAGATGATGGCTGGCAAGAGATTGAAAGTAAACAAAAGGATGTTGACTGTGTTGTACAAGAAGGGGCACAGTTTGCTACTAGGCTGACTGGTATCAGAGAGAATACTAAATTTCAGAAGAAAACACACAACAATGAGCAGACATCAGGTCTGAAGCATTTAGTAGAAGGAGTAAAGCAGCATCACAACGTGAAAAATGTTTATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAACCAGCAGCAACTGGCATGGAGCATTATGACACTGCCTTGGCATATCCAGTGCAGTCACCAGGTGTGCTTGGAAATCAACCAGACATTGTCATGGACAGCTTGGCCGTACATGGCCTAGGCCTGGTGCACCCAAAGAAGGTTTTCAACTTCTATAATGAGCTCCATGCTTACTTGGCTTCTTGTGGAGTGGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGAAGAGTCTCTCTTACACGAAGCTATCATCACGCGCTTGAGGCTTCCATTGCTCGTAACTTCACTGAGAATGGATGCATTGCTTGCATGTGTCACAACACTGATGGCCTTTACAGTTCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTCTACCCTCGCGATCCTGCTTCCCACACCATCCATATTTCTTCTGTTGCATATAACTCACTTTTCCTTGGAGAATTCATGCAACCTGATTGGGACATGTTTCATAGTTTACACCCTGCAGCAGAATATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCAATTTATGTGAGTGACAAGCCAGGCAACCACAATTTTGATCTTCTTAAGAAGCTGGTTCTTCCTGATGGTTCGGTTCTCCGAGCACAGTTACCAGGGAGGCCAACTCGTGATTCTCTGTTTGTTGATCCAGCCAGAGATGGGACTAGCTTGCTCAAAATCTGGAACATGAACAAATGTTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGGTGGTGCAAGATAGAGAAGAAAACTCGCATCCATGATACATCTCCCGGTACACTAATTGCCTCTGTCTGTGCCTCTGATGTTGACCTTATCACCCAAGTAGCAGGTCCTGAATGGCTTGGAGAGACAATTGTTTATGCTTACCGATCAGGTGAGGTGATTCGGCTACCAAAGGGGGTTTCAGTTCCGGTGACACTGAAAGTTCTTGAGTTTGAACTTTTCCATTTCTGTCCAATCCATGAAATAGCACCAGGTATTTCATTTGCAGCGATAGGGCTACTTGATATGTTCAACACCGGAGGAGCTGTGGAGCTGGTTGAAATTCACAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTTATCAGAATTAACCTGTTCTCTGAGTCCTAACCGAGCAGCAGCAGCAGCAACTGTTTCCCTTAGAGTCAGGGGAAGAGGCAGGTTTGGAGTTTACTCCTCTCAACGCCCAGTGAAGTGTGTAGTAGATGGCTCTGAAACAGACTTCAACTATGAGTCAGAGAGTGGGTTGGCAACCTTCTCCATCCCAGTTCCTCAAGAGGAGATGTATAGATGGGCAATAGAGATCCAAGAAAAGGGTGTTGCTGTAGTTAGCATTGACTCAATTGAGGGAATTGTTGGGGACATGAGGGTGGTGAAATACCAAAAAATAAGTTTATCATAA 2523 0.4582 MTVLKTTPTQFPTWIPPFREPLVKCSKMTVTPKISVNDKKLVVHGKTILTGVPDNIVLTPGSGSGLVTGAFVGATASHSKSLHVFPMGVLEELRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPTIYTVFLPLLEGPFRAVLQGNDKNEIEICLESGDNAVETDQGLHLVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKRTLKFVQYDYSLSAGATPPRFLIIDDGWQEIESKQKDVDCVVQEGAQFATRLTGIRENTKFQKKTHNNEQTSGLKHLVEGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFTENGCIACMCHNTDGLYSSKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLIASVCASDVDLITQVAGPEWLGETIVYAYRSGEVIRLPKGVSVPVTLKVLEFELFHFCPIHEIAPGISFAAIGLLDMFNTGGAVELVEIHRASNNKPELFDGEVLSELTCSLSPNRAAAAATVSLRVRGRGRFGVYSSQRPVKCVVDGSETDFNYESESGLATFSIPVPQEEMYRWAIEIQEKGVAVVSIDSIEGIVGDMRVVKYQKISLS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03028 840 SUPERFAMILY (Trans)glycosidases 222 562 IPR017853 -
Vimu6g03028 840 Gene3D Aldolase class I 224 557 IPR013785 -
Vimu6g03028 840 PANTHER - 28 809 IPR008811 -
Vimu6g03028 840 Pfam Raffinose synthase or seed imbibition protein Sip1 34 794 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03028 Vimu-Chr6 26746471 26750899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03028 28 593 Glycoside Hydrolase AT3G57520 80.776 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03028 K06617 - gmx:100807861 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03028 6 26746471 26750899 Vimu6g03028 6 26746471 26750899 ECH
Vimu6g03028 6 26746471 26750899 Vimu3g00410 3 3956485 3960352 PCT