Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00410 ATGACGGTCACTCCTATGATCTCTATCAATGATGGGAACCTGGTGGTTCATGGCAAGATTATACTGAGTGGAGTGCCAGACAACATTGTCCTAACTCCAGGAACTGGAAAGGGCCTTGTGACAGGTGCATTTATTGGTGCCACTGCTTCCAACAGCAAAAGTCTGCATGTCTTTCCCATGGGTGTCTTAGAGGATCTTCGATTCTTGAGTTGTTTCCGGTTTAAGTTATGGTGGATGACTCACAGAGTGGGAACCTGCGGGAGGGATGTCCCATTGGAGACTCAATTCATGCTTATAGAGAGCAAAGACAGTAAAGATTATCAAGAGAATTCTCCAACAGTTTACACTGTTCTGCTTCCTCTCCTGGAAGGCCAGTTCCGTGCTGTTCTACAAGGCAATGATAAAAACGAGATAGAGATTTGCCTTGAGAGTGGAGATCCTGCTGTTCAGACCAATCACGGCCTTCACTTGGTCTACATGCATGCTGGCACCAACCCCTTTGAAGTCATCAACCAAGCTGTCAAGGCTGTAGAAAAACATATGCAAACTTTCCGGCACCGTGAGAGGAAAAAATTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAAGGTGTTGAGGAAGGCCTCAAAAGCCTATCAGAGGGAGGTACAGGTCCAAGGTTCCTCATCATTGATGATGGTTGGCAACAGATTGAAAGTAAACCAAAAAGTGATGATGATTGTCTTGTACAAGAAGGAGCACAGTTTGCTACTAGGTTAACTGGTATTAAAGAAAATACTAAATTTCAAAAGAATGGACAGAGCAATGACACAATTTCTGGTTTGAAGCATGTTGTAGATGAAGCAAAGCGATGTCACAATGTGAAATATGTTTATGTTTGGCATGCTCTGGCTGGTTATTGGGGAGGAGTGAAGCCTGCAGCAAGTGGCATGGAACATTACGATACTTCCTTGGCATATCCAGTACAGTCTCCTGGTGTGCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGTCTGTACATGGCTTGGGACTGGTGCACCCGAAGAAGGTTTTTGATTTCTACAATGAGCTTCATGCTTACTTAGCATCATGTGGAGTAGATGGAGTGAAGGTTGATGTGCAAAACATTATTGAGACCCTAGGTAGTGGACACGGTGGTAGGGTCACACTCACGCGCAGCTATATTCAGGCACTTGAGGCCTCTGTTGCTCAGAATTTTCGTGACAATGGATGCATTGCCTGTATGTGCCATAACACTGATGGCCTTTACAGTTCAAAGCAGACTGCTGTTGTGAGAGCATCTGATGACTTTTATCCCGGTGATCCTGCTTCCCACACAATTCACATTTCATCTGTTGCATATAACACACTTTTTCTGGGAGAGTTTATGCAAGCTGACTGGGATATGTTTCATAGTTTACATCCAGCAGCAGAGTACCATGCTGCAGCTCGTGCAGTCAGTGGAGGTCCAATTTATGTTAGTGATAAGCCAGGAAGGCACAATTTTAATCTTCTCAAGAGACTGGTTCTGTATGATGGTTCAGTTCTCCGTGCTCAGTTACCAGGCAGGCCTACCGTTGACACTCTCTTTCTTGATCCAGCAAGAGATGGAACCAGCTTGCTCAAGATATGGAACTTGAACAAATGCTCTGGCGTGGTTGGTGTGTTTAATTGCCAAGGTGCTGGGTGGTGCAAAATACAAAAGAAAACCCGAATTCATTGTCCATCACCTGGGACTCTCACTGGCTCAGTTTGTGCCTCTGATGTTGACCTCATTGCTCAAGTAGCCGGTGCTGATTGGCATGGTGACACTGTTGTTTATGCCTACAGATCAGGTGAGGTGATTCGGCTACCAAAAGGTGTTTCGGTTCCTGTGACACTGAAAGTTCTGGAGTATGAACTTTTCCATTTTTGTCCAATCAAGGAAATTGAGCCAAGTATTTCATTTGCACCGATAGGGTTATTGGATATGTTAAACGTTGGAGGTGCTGTGGAACATTTTGATGTTCAAAAAGAATCTGATGAAGATAAATCAGGAAAAGCAACTTTTATTGTGAAAGTGAGGGGAAATGGCAGATTTGGAGTTTATTCTTCTGAGTGTCCTGTGAAGTGTGTGGTAGCTGGCAATCAAACAGATTTCAACTATGACTCAGAGAATGGATTGACAAGCTTTTACATCCCTGTGCCTGAAAGGGAGATGTACTTATGCCAGATAGAGATCCATTTTTGA 2268 0.4418 MTVTPMISINDGNLVVHGKIILSGVPDNIVLTPGTGKGLVTGAFIGATASNSKSLHVFPMGVLEDLRFLSCFRFKLWWMTHRVGTCGRDVPLETQFMLIESKDSKDYQENSPTVYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDPAVQTNHGLHLVYMHAGTNPFEVINQAVKAVEKHMQTFRHRERKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSEGGTGPRFLIIDDGWQQIESKPKSDDDCLVQEGAQFATRLTGIKENTKFQKNGQSNDTISGLKHVVDEAKRCHNVKYVYVWHALAGYWGGVKPAASGMEHYDTSLAYPVQSPGVLGNQPDIVMDSLSVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGSGHGGRVTLTRSYIQALEASVAQNFRDNGCIACMCHNTDGLYSSKQTAVVRASDDFYPGDPASHTIHISSVAYNTLFLGEFMQADWDMFHSLHPAAEYHAAARAVSGGPIYVSDKPGRHNFNLLKRLVLYDGSVLRAQLPGRPTVDTLFLDPARDGTSLLKIWNLNKCSGVVGVFNCQGAGWCKIQKKTRIHCPSPGTLTGSVCASDVDLIAQVAGADWHGDTVVYAYRSGEVIRLPKGVSVPVTLKVLEYELFHFCPIKEIEPSISFAPIGLLDMLNVGGAVEHFDVQKESDEDKSGKATFIVKVRGNGRFGVYSSECPVKCVVAGNQTDFNYDSENGLTSFYIPVPEREMYLCQIEIHF 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00410 755 PANTHER - 1 751 IPR008811 -
Vimu3g00410 755 SUPERFAMILY (Trans)glycosidases 195 521 IPR017853 -
Vimu3g00410 755 Gene3D Aldolase class I 198 520 IPR013785 -
Vimu3g00410 755 Pfam Raffinose synthase or seed imbibition protein Sip1 7 738 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00410 Vimu-Chr3 3956485 3960352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00410 1 557 Glycoside Hydrolase AT3G57520 78.853 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00410 K06617 - gmx:100807861 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00410 3 3956485 3960352 Vimu3g00410 3 3956485 3960352 ECH
Vimu6g03028 6 26746471 26750899 Vimu3g00410 3 3956485 3960352 PCT