Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03013 ATGTGGAAGATCGAGGTGGGAGAAGCACCGGCATTGCTTGTTGATGACCTGCAGGATGGGGCTCAAAATGACCTTGAATTGAAAAACGGAATTTGCAAAGCAACTGCTACCGTTGGTGATAAGACGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCGTAATCTTGGAGAATGGGTTCGTCCAACTGTGAGGGGCACCAAACCTGTATCGTGCAAAGGCCTTTCAGCAGTGGCTTTGGACGACAAAATACTGATTCTTAAGAAGGGTTCTAAGCCAGATGATCAAATATGGTTCCTGGAGGTTGACACCCAATATGTTAGGCAGCAGCAAGAATATTTGGGGACTGAGGTGGTTGCATGGAGTAAAGGTGTGGTAGGAAATGCTGAGAAGCCTGTTGTAATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACATTGATAGCAATGCTTATGAAGGAGTTTCCATCTATGTTTGGTTTTTCTGTGAGCCACACCACCCGGGCTCCGAGAGGTATGGAGAAGGATGGGGTCCATTATCATTTTACTGAGAAGAGTATAATGGAGAAAGAAATCAAAGAGGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGTAATCTGTATGGAACTAGTGTTGAGGCGGTGGAAGTGGTGGCAGATGCAGGGAAAAGATGTATTCTTGATATTGATGTTCAAGGTGCAAGATCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTGTATGTCCCCCGTCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGAGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTAAGGAATGCCGAGGCTGAGATTGAGCAAGGCAAATCTTCTCACATATTTGATTTCATCCTGTACAATGACAAACTTGTTGAGTCTTACGAGAAACTTAAGAAACTATTGGGACTTGATGATTTTGTCACTACTACTAAATCAGCAGGCCATGGAGAGATTGATCTACCAATTGACCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACCGCATCTCCTCGGGAGAGAAGGAATCAAAGAATTTGATCATATTAGATGTTTCCTCGCTAAAAGGAGGTGCACCTGGACGGACCAGAGGCCTAAATTTCCAAGCAATTGGCTCGTTCTCCAATGGCTTGACTGAGATAGAAGGACTTAGCTAA 1215 0.4403 MWKIEVGEAPALLVDDLQDGAQNDLELKNGICKATATVGDKTYVIGGADDGTLSIEVQIFDRNLGEWVRPTVRGTKPVSCKGLSAVALDDKILILKKGSKPDDQIWFLEVDTQYVRQQQEYLGTEVVAWSKGVVGNAEKPVVISGPSGVGKGTLIAMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAEAEIEQGKSSHIFDFILYNDKLVESYEKLKKLLGLDDFVTTTKSAGHGEIDLPIDHSVSKIDNKIIINRISSGEKESKNLIILDVSSLKGGAPGRTRGLNFQAIGSFSNGLTEIEGLS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03013 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 319 IPR027417 -
Vimu6g03013 404 SMART gk_7 137 323 IPR008145 -
Vimu6g03013 404 Gene3D - 135 323 IPR027417 -
Vimu6g03013 404 NCBIfam guanylate kinase 139 319 IPR017665 GO:0004385|GO:0006163
Vimu6g03013 404 FunFam Guanylate kinase 2 131 323 - -
Vimu6g03013 404 ProSiteProfiles Guanylate kinase-like domain profile. 138 320 IPR008144 -
Vimu6g03013 404 CDD GMPK 140 259 - -
Vimu6g03013 404 Gene3D - 29 134 IPR015915 GO:0005515
Vimu6g03013 404 Coils Coil 276 296 - -
Vimu6g03013 404 ProSitePatterns Guanylate kinase-like signature. 173 190 IPR020590 -
Vimu6g03013 404 Pfam Guanylate kinase 138 319 IPR008145 -
Vimu6g03013 404 PANTHER GUANYLATE KINASE-RELATED 36 350 - -
Vimu6g03013 404 SUPERFAMILY Galactose oxidase, central domain 35 117 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03013 Vimu-Chr6 26634498 26636565 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03013 K00942 - gmx:100808931 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03013 6 26634498 26636565 Vimu6g03013 6 26634498 26636565 ECH
Vimu6g03013 6 26634498 26636565 Vimu3g00400 3 3847152 3850064 PCT