Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00400 ATGGTGTGGGGATTGGATTCTGACAAGGATTTCTCTATGGGAGAAGCACCTATTGGTCAAGACCTGCAGAATGGGAATGACAATGACTTTGAATCAAAAAGTGGGACTTTTGAAACAAGCACTATCATTGGTGAAAAAAAGTATGTCATTGGTGGAACTGCTGGTGAAACTTTTTATGTGAAAGTTCAAATTCTTGACAACAACTGTCTTGGGGAATGGGTTAATGTTGTTGAGCTAGGCACTAAACCCATTTCATGTAATGGCCACTCAGCCGTGCTTTTGAAAGACAGAATACTAATTCTTAAGAAAAATTCTAACCCAGATGACTGTATATGGTTTCTGGAGGTGGACACTACATATGTCAGGCAGCAGCAGAAAAAAAATTTGGGGACTGAGGTTGTAGCATGGAGTAAGGGTGTGATAGGAAACGTGGAGAAACCTGTTGTTATAAGTGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCTCTCCTTATGAAGGAATTCCCCTCTATGTTTGGCTTTTCTGTGAGCCACACAACCCGTGCCCCGAGAGGCATGGAGAAAGATGGGGTCCATTACCATTTTACGGAGAAGAATGTTATGGAGAAAGAGATTAAAGATGGAAAGTTTCTGGAGTTTGCTTCTGTCCATGGAAATCTCTATGGGACCAGTGTTGAGGCTGTGGAGCTGGTATCAGATGCAGGGAAAAGATGTATTCTTGATATTGATGTTCAAGGGGCAAGATCCGTGAGGGCTAGTCCTCTAGAAGCCATGTTCATCTTTATCTGCCCCCCATCAATGGACGAACTGGAGAAGCGTCTTCGTGACCGAGGGACTGAGACAGAAGAACAGGTCCTAAAGAGACTACGAAATGCTCAGGCTGAGATTGAGCAAGGGAGATCATCAGGCATATTTGATCACATCTTATTCAATGACAATCTTGAGGACTGTTATGAGAATCTGAAGAAATTATTGGGACTTGATGAATATGCCACTACTCCCAAGTCTGCACCAAAAGAGATAAATCTCCCAAGGGATCATTCAGTGTCAAAAATTGATGACAAAATCATCATAAATTCCACTTCTTCAAAACTAGAAAAGGAATCAAAGAACTTGATCATGTTAGACGTGTCTTGTCTTAAAGGGGGTGCACCTGGACGGACAAGAGGACTTAATATAGAAGCCATTGACTCGTTTTCAGAAGGCTTCAATGGCAATGGGAATGGACCAATTTGA 1239 0.4205 MVWGLDSDKDFSMGEAPIGQDLQNGNDNDFESKSGTFETSTIIGEKKYVIGGTAGETFYVKVQILDNNCLGEWVNVVELGTKPISCNGHSAVLLKDRILILKKNSNPDDCIWFLEVDTTYVRQQQKKNLGTEVVAWSKGVIGNVEKPVVISGPSGVGKGTLISLLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKNVMEKEIKDGKFLEFASVHGNLYGTSVEAVELVSDAGKRCILDIDVQGARSVRASPLEAMFIFICPPSMDELEKRLRDRGTETEEQVLKRLRNAQAEIEQGRSSGIFDHILFNDNLEDCYENLKKLLGLDEYATTPKSAPKEINLPRDHSVSKIDDKIIINSTSSKLEKESKNLIMLDVSCLKGGAPGRTRGLNIEAIDSFSEGFNGNGNGPI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00400 412 CDD GMPK 147 323 - -
Vimu3g00400 412 FunFam Guanylate kinase 2 138 331 - -
Vimu3g00400 412 SUPERFAMILY Galactose oxidase, central domain 34 123 IPR011043 -
Vimu3g00400 412 Gene3D - 142 334 IPR027417 -
Vimu3g00400 412 NCBIfam guanylate kinase 146 326 IPR017665 GO:0004385|GO:0006163
Vimu3g00400 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 326 IPR027417 -
Vimu3g00400 412 SMART gk_7 144 330 IPR008145 -
Vimu3g00400 412 ProSiteProfiles Guanylate kinase-like domain profile. 145 327 IPR008144 -
Vimu3g00400 412 PANTHER GUANYLATE KINASE-RELATED 45 375 - -
Vimu3g00400 412 MobiDBLite consensus disorder prediction 1 30 - -
Vimu3g00400 412 ProSitePatterns Guanylate kinase-like signature. 180 197 IPR020590 -
Vimu3g00400 412 Pfam Guanylate kinase 145 326 IPR008145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00400 Vimu-Chr3 3847152 3850064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00400 K00942 - gmx:100812658 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00400 3 3847152 3850064 Vimu3g00400 3 3847152 3850064 ECH
Vimu6g03013 6 26634498 26636565 Vimu3g00400 3 3847152 3850064 PCT