Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03003 ATGAAGCTCGCGACAAAGGGGATTGATTTCACAGGTTCGCGATTAGGTTTTGGTTCGAGATTAAGGTGTGACTGCGACCTCGTGGTGGTTGACAATGGAGCAACTCGTGATGCGCATTTGAAGAAGATGAAGGGTTGGGGCTTCTGCGCGATCTGCATGATGAATATGAAGGAGTTTTGCAGTTCAGACTCGCTGTATAGCTCTCACAGTTTTGTTGTTTGGGTTGCTTCATGGCACGAGGATGAAGAGAAAACGAACTTGGTTTGCAGTGATGACACATGGACTTTGGCTAGCCATGGTGGTTTTGCTGATGCTTCGCGGATTTCACAATTGGCGAGGAAGACGAACATGGTTTTGGGACGGTGGTGGTTGTGTAGCGACGAATGGAGGCTAGTGGTAACGTTTTCGGTGGCTGTCATGGACTGTCAGGCAGCTGTCGTCGTGCCATTGGGTCTCCTCTTCTTTGCCTCCGGCCTCCTTGTTAATCTCATTCAGGCGATATGCTATGTTGTATTAAGGCCGGTGTCGAAGAATTTGTACCGACGGATCAACCGGGTTGTAGCGGAATTGTTGTGGCTGGAGCTTTTCAGCTGGATGAAAAAGACTATGAACGAGGTCCAAATATTCACAGATCATGAAACCTTTCGTTTAATGGGTAAAGAGCATGCGCTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGGTGAATGCCGTCTATGGTTTGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGAGGAGTGCCTCCTAATTACCGGCTCATCTCCAATGAATCATGGCCATCCAATGCCACACGTACTATCCCAACCTGTGGTGAATGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAAGATGAAAGCACATTAAGGTTAGGCATCCAACGACTGAGTGATTATCCTCTTCCCTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGCTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCAACTTCCACTGGATTGCCTGTTCCTAGAAATGTTTTAATTCCAAGAACTAAGGTAGGTGTTTTGAACAGTACCTTTGGGAATATGGACTTCGATTTAGAGGTGCATCAGAGAAAACCCAGGAAAGAAACTGTTTGGATTTTCTTTTGTGGAAAACAGGGTTTTGTTTCTGCAGTTAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCTGTGCCAAAGAATTCCCCTGCTCCTACAATGCTAAGACTCTTCAAAGGGCAACCTTCAGTGCATTCAGGGCGTAGCAGATTAGATCCGCCTCTCCAAGCCGTTTGGTTGGCTTGGAGATCCTTCTTTCTCTGTCACGGGCAAGCTGATAGTTTCTCAAATCAACACCAGCAGCTTTTCCATGACTTCCCTCGCCAGACATACCATCTGTGTCATCACCAAGTCCCACCGGGCGTACCAGCTCCATTAGTAGTATGCTCCACCTCCACGAGAATCTTCTTCTCACTTCCAGAGTTTTCCGGGTGCATCGCCATCCTTGTTTCATCAAAAATGACATCCCTACTAATGATTAGTTTTGAAGGATCTGTAATATTCATTCCACAGGTGCATGTTCACATCAAGCGGCATTTAATGAAGGAAATGCCAGAAACAGATGAGGCCGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTCTATTAGACAAACATATGGCTGAGGATACGTTTAGTGACAAAGAGCTGCAGGATGCTGGTCGACCAATAAAGTCTCTTCTGGTAGTGATATCTTGGGCCTGTCTAATTGTTGCGGGGTTTCTAAAGTTCCTACAATGGTCTTCGCTACTATCTTCATGGAAGGGTGTTGCATTCTCAGCTGTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTTTGATTCAATTCTCGCAGTCAGAGCGTTCAAAACCAACTAAGATCGCACCTGCTCAGTCAAAAAACAAGGGGGAACAACTAGAGGCTAGGAATGACAAGCAACAGTAG 2106 0.4563 MKLATKGIDFTGSRLGFGSRLRCDCDLVVVDNGATRDAHLKKMKGWGFCAICMMNMKEFCSSDSLYSSHSFVVWVASWHEDEEKTNLVCSDDTWTLASHGGFADASRISQLARKTNMVLGRWWLCSDEWRLVVTFSVAVMDCQAAVVVPLGLLFFASGLLVNLIQAICYVVLRPVSKNLYRRINRVVAELLWLELFSWMKKTMNEVQIFTDHETFRLMGKEHALVISNHRSDIDWLVGWVSAQVNAVYGLRSGCLGSTLAVMKKSSKFLPEECLLITGSSPMNHGHPMPHVLSQPVVNVIGWSMWFSEYLFLERSWAKDESTLRLGIQRLSDYPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKVGVLNSTFGNMDFDLEVHQRKPRKETVWIFFCGKQGFVSAVSHMRSFVPAIYDVTVAVPKNSPAPTMLRLFKGQPSVHSGRSRLDPPLQAVWLAWRSFFLCHGQADSFSNQHQQLFHDFPRQTYHLCHHQVPPGVPAPLVVCSTSTRIFFSLPEFSGCIAILVSSKMTSLLMISFEGSVIFIPQVHVHIKRHLMKEMPETDEAVAQWCRDIFVAKDALLDKHMAEDTFSDKELQDAGRPIKSLLVVISWACLIVAGFLKFLQWSSLLSSWKGVAFSAVGLAVVTALMQILIQFSQSERSKPTKIAPAQSKNKGEQLEARNDKQQ 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03003 701 CDD LPLAT_LCLAT1-like 190 455 - -
Vimu6g03003 701 MobiDBLite consensus disorder prediction 674 701 - -
Vimu6g03003 701 Pfam Acyltransferase C-terminus 561 626 IPR032098 -
Vimu6g03003 701 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 146 672 - -
Vimu6g03003 701 SMART plsc_2 223 380 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03003 Vimu-Chr6 26528223 26545432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03003 562 699 Miscellaneous Gene Families AT3G57650 58.042 3.22e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03003 K13523 - apan:127266385 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03003 6 26528223 26545432 Vimu6g03003 6 26528223 26545432 ECH
Vimu6g03003 6 26528223 26545432 Vimu3g00375 3 3585537 3593197 PCT