Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00375 ATGACTGCTGCTGTTGTCGTCCCACTGGGCCTTCTCTTCTTCTCCTCTGGCCTCATCGTTAACCTCATTCAGAGAGGAAGTGTTTTTCACTGTCTGTTGGTTGTTTATCGATTAATTGATGATAATTGGTACTATGGGGTGTTGACAAGTGGTGGTTTGATGCTCTCAGGCAGTATGCTACGTGTTTGTGCGGCCGGTGTCGAAGAATTTGTACCGGCGGATGAACCGCGTGGTGGCGGAACTGCTGTGGTTGGAACTCGTGTGGATTATCGATTGGTCCAAGTATTCACAGATAGTGAAACTTTTCATTTAATGGGTAAAGAGCATGCTCTTGTCATATCCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGCGTTCAGGTTGCCTTGGCAGCACTCTTGCCGTGATGAAGAAATCCTCTAAGTTTCTACCGGTATGTTATGTCTGGTTGGACATGGAAGCTTTTGAACCTACTTGCATTTTCTTTTTGGCTTCATTGATAATATCAGCATTTGTGTCAATGTTGATCTATCAGCTAAGTTCAAATGTGCAGTTGGGCCTACAACAACTGAGGGATTTCCCTCTTCCCTTTTGGTTGGCTCTATTTGTTGAAGGAACTCGCTTTACACAGGCCAAACTATTAGCTGCTCAGGAGTATGCAGTCTCAGCTGGATTGCCTGTTCCTAGAAATGTTCTGATTCCAAGAACTAAGGGTTTTGTTTCAGCAGTAAACCATATGCGCTCATTTGTTCCTGCCATTTACGATGTAACAGTGGCAATTCCCAAGAGTTCACCTGCTCCTACAATGCTAAGACTCTTTAGAGGAAAATCTTCAGTGGTGCATGTGCATATTAAGCGACATTTGATGAAGGATTTGCCGGAAGAAAATGAAGCTGTTGCTCAATGGTGTCGAGATATATTTGTGGCTAAGGATGCATTGTTGGACAAACATATAGCTGAGGACACATTTAGTGACCAAGAGCTGCAGGATACCGGTCGACCTGTAAAGTCTCTTGTGGTTGTCATATCTTGGGCTTGTGTGGTTGTAACGGGGGCCATAAAGTTCCTTCAATGGTCTTCACTACTATCTTCCTGGAAGGGTGTTGCATTTTCTGCAATTGGTTTGGGAGTTGTCACTCTACTCATGCACATCTTGATTAAGTTCTCACAAGCTGAGCGTTCAACCCCTTCCAAGGTTGCTCCAGCAAAGTCCGGGACTGGGGAAGAGCTAGAGGCTAGGGATAACAAACAAGACTAG 1275 0.4455 MTAAVVVPLGLLFFSSGLIVNLIQRGSVFHCLLVVYRLIDDNWYYGVLTSGGLMLSGSMLRVCAAGVEEFVPADEPRGGGTAVVGTRVDYRLVQVFTDSETFHLMGKEHALVISNHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVCYVWLDMEAFEPTCIFFLASLIISAFVSMLIYQLSSNVQLGLQQLRDFPLPFWLALFVEGTRFTQAKLLAAQEYAVSAGLPVPRNVLIPRTKGFVSAVNHMRSFVPAIYDVTVAIPKSSPAPTMLRLFRGKSSVVHVHIKRHLMKDLPEENEAVAQWCRDIFVAKDALLDKHIAEDTFSDQELQDTGRPVKSLVVVISWACVVVTGAIKFLQWSSLLSSWKGVAFSAIGLGVVTLLMHILIKFSQAERSTPSKVAPAKSGTGEELEARDNKQD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00375 424 Pfam Acyltransferase 107 266 IPR002123 GO:0016746
Vimu3g00375 424 Pfam Acyltransferase C-terminus 277 350 IPR032098 -
Vimu3g00375 424 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 6 389 - -
Vimu3g00375 424 SMART plsc_2 110 246 IPR002123 GO:0016746
Vimu3g00375 424 CDD LPLAT_LCLAT1-like 93 291 - -
Vimu3g00375 424 MobiDBLite consensus disorder prediction 399 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00375 Vimu-Chr3 3585537 3593197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00375 1 423 Miscellaneous Gene Families AT3G57650 57.882 4.56e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00375 K13523 - gmx:100814107 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00375 3 3585537 3593197 Vimu3g00375 3 3585537 3593197 ECH
Vimu6g03003 6 26528223 26545432 Vimu3g00375 3 3585537 3593197 PCT