Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02884 ATGGATGTCGCTTCCTACTCTCTTCTTTTCGTCTGCTTTCTTCAATCGGTCAGAGCAATATTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCGCTTCACGATGTTCCCGGTTCTAATTTCTTCTCCTCCTGGGACTTCACCGCCGACCCCTGCAACTTCCCCGGCGTTTACTGCGTCCACGATAAAGTCGTCGCGCTCAACCTCGGCGACCCCAGGGCCGGTTCGCCCGGTCTCACTGGAAAACTCGACCATTCCATTTCCAAGCTATCTGCTCTCGCCGACCTCACCGTCGTCCCCGGAAGAATATACGGCCCTCTCCCTCAGTCGATCTCCCAGTTAAAAAACCTCCGCTTCCTCGGCGTCAGCCGGAATTTCATCTCCGGCCAGATTCCGCCGGGTTTAAGTCAGCTTCGCAATATTAGAACCATCGATCTCAGTTACAACCAGCTCACCGGAACAATTCCTCCGTCCATCGGAACCTTACCGCTGCTGACCAACCTCATCCTCTGCCACAACCGCCTCTCCGGTTCGGTTCCCTCGTTCGCCTCGGCTTTTTCCCTAACCCGGCTCGAACTGAAGCACAACGCTCTCTCCGGTTCCCTCGCGCCGTACTCTCTCCCTCCCTCCCTACACTACCTGTCTTTATCGTGGAACAAACTCACTGGACCAGTGGACCGCCTCTTAACGCGCCTCAATCGGCTTAACTACTTGGACCTTGGCTTGAACCAGTTCACTGGCCGAATTCCGACTGAAATATTCTCATTCCCCCTCACTAATCTACAACTGGAAAGAAACCAATTCACCGGCCCGGTCCAACCGGTGAATGAGGTGACAATCCAGACCGTTGATCTCAGCTACAATAGGTTATCCGGTCAGGTGTCGCCAATGTTGGCGAGCGTGCAGAACCTGTACCTAAACAACAACTGGTTCACAGGGCAGGTTCCCGGCAGCTTCGTTGAACGGTTATTGGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTTACCGGCATTGCAATAAGTCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTACAACTGCATGGTACCACCGGTACAGACGGCGTGCCCCTTCAACGCCGGGAAGCGAAAAATCAGACCAGCTCAGCAGTGCAACCGCCGCTGA 1176 0.5434 MDVASYSLLFVCFLQSVRAILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFPGVYCVHDKVVALNLGDPRAGSPGLTGKLDHSISKLSALADLTVVPGRIYGPLPQSISQLKNLRFLGVSRNFISGQIPPGLSQLRNIRTIDLSYNQLTGTIPPSIGTLPLLTNLILCHNRLSGSVPSFASAFSLTRLELKHNALSGSLAPYSLPPSLHYLSLSWNKLTGPVDRLLTRLNRLNYLDLGLNQFTGRIPTEIFSFPLTNLQLERNQFTGPVQPVNEVTIQTVDLSYNRLSGQVSPMLASVQNLYLNNNWFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTAEIPVSSTLCLQYNCMVPPVQTACPFNAGKRKIRPAQQCNRR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02884 391 SUPERFAMILY L domain-like 33 365 - -
Vimu6g02884 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 389 - -
Vimu6g02884 391 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vimu6g02884 391 Gene3D Ribonuclease Inhibitor 22 211 IPR032675 -
Vimu6g02884 391 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515
Vimu6g02884 391 Gene3D Ribonuclease Inhibitor 212 374 IPR032675 -
Vimu6g02884 391 FunFam Nuclear pore complex protein NUP107 23 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02884 Vimu-Chr6 25439152 25440989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02884 25 369 Receptor kinase-like Gene Family AT3G51740 32.222 1.36e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02884 - - gmx:100817314 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02884 6 25439152 25440989 Vimu6g02884 6 25439152 25440989 ECH
Vimu6g02884 6 25439152 25440989 Vimu3g01700 3 31150772 31153325 PCT