Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01700 ATGGCCACCTGCAAAAATCTCTGTGCTCTTCTCCTTTTGCTTTTCTTCTCTTTTCTACATGTGAAGGCTATTTTAGACCCTGCTGATTTCCTTGCTCTTCAATCCATTCGTAAATCCCTCCAAGACATGCCCGGTTCCCATTTCTTCTCCTCCTGGGATTTCACCGCAGACCCATGCAACTTCGCCGGGGTTTACTGCGACTCCGACAGGGTCATCTCCCTCAACCTCGGCGATCCCAGGGCCGGCTCTCCCGGACTCACCGGCCGCCTCGACCCCGCCCTCGGCAAGCTCTCCGCGCTCGCCGAGTTCACCGTTGTCCCCGGCAGAATCTACGGTCCTCTCCCAGAATCCCTCTCCGATTTGAAGAACCTCAGGTTTCTCGGCGTCAACCGCAACTTCATCTCCGGCGAAATTCCGACCCAGCTCGGCGAGTTACGTAGCCTCAGAACCATCGATCTCAGCTACAACCAACTCACTGGACGCATTCCTCCAACCGTGGGATCACTACCGGAGCTGACTAACCTGATCCTCTGCCATAACCGCCTCTCCGGTTCGCTCCCTCGGTTCGAGTCACACACTTTAACACGGCTCGACCTAAAGCATAACTCTCTCTCCGGTTCGCTCCCTCCCAACTCGCTCCCTCCCTCTCTGCAGTACCTCTCCCTGGCCTGGAACCAGCTCACCGGCCCAATGGACCGCCTCCTGGGCCGCCTCGACCAGCTTAACTATTTGGACCTTAGTCTCAACCAGTTCACGGGCCCAATCCCGGACCGGATCTTTTCCTTCCCGCTCACGAATCTGCAGCTGGAGAGGAACCAGTTCTCGGGTCCGGTCCAGCCCGTTGAGCAGGTGTCCATCCCGACCGTTGATCTTAGTTATAACCGGCTCTCCGGTCAGATATCGCCAATGCTGGCGAGCGTGCAGTACCTGTACCTGAATAACAACCGGTTTTCTGGCAGGGTACCGGCTAGCTTCGTGGAGCGGTTGCTGGATGCGAGCATTCAGATACTTTACTTGCAGCATAACTATCTGACGGGGATTGAGATAAGCCCAACGGCGGTGATTCCAGAGAGAAGCTCCCTGTGTCTGCAGTATAATTGCATGGTCCCGCCCGTTGAGACACCCTGTCCCTTGAGGGCTGGCAAGCAGAAAACCAGGCCTACTGAGCAATGCAACCAGTTGAAAACCTGA 1191 0.5617 MATCKNLCALLLLLFFSFLHVKAILDPADFLALQSIRKSLQDMPGSHFFSSWDFTADPCNFAGVYCDSDRVISLNLGDPRAGSPGLTGRLDPALGKLSALAEFTVVPGRIYGPLPESLSDLKNLRFLGVNRNFISGEIPTQLGELRSLRTIDLSYNQLTGRIPPTVGSLPELTNLILCHNRLSGSLPRFESHTLTRLDLKHNSLSGSLPPNSLPPSLQYLSLAWNQLTGPMDRLLGRLDQLNYLDLSLNQFTGPIPDRIFSFPLTNLQLERNQFSGPVQPVEQVSIPTVDLSYNRLSGQISPMLASVQYLYLNNNRFSGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCLQYNCMVPPVETPCPLRAGKQKTRPTEQCNQLKT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01700 396 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515
Vimu3g01700 396 SUPERFAMILY L domain-like 36 369 - -
Vimu3g01700 396 Gene3D Ribonuclease Inhibitor 191 372 IPR032675 -
Vimu3g01700 396 FunFam Nuclear pore complex protein NUP107 27 188 - -
Vimu3g01700 396 Pfam Leucine Rich repeat 191 206 IPR001611 GO:0005515
Vimu3g01700 396 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Vimu3g01700 396 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 394 - -
Vimu3g01700 396 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01700 Vimu-Chr3 31150772 31153325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01700 24 346 Receptor kinase-like Gene Family AT3G51740 32.778 3.18e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01700 - - gmx:100794756 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01700 3 31150772 31153325 Vimu3g01700 3 31150772 31153325 ECH
Vimu6g02884 6 25439152 25440989 Vimu3g01700 3 31150772 31153325 PCT