Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02874 ATGCTTAAGCTCCTCAACAAGAACCTCCGTCGCCTCAGCTCCCTTCTGAAGTGGTCACTACGGCGTCGTTCCAAGTCCAACCCTAGCTTCGGCAACCCCACTCCCAAACCTCACACCCAACCAAGAACCAGCACCCCAGAACCTTCCCCTCCTCCTTCCAGACCAATACGAATCGCTACGTTCAACGCCGCATTCTTCTCTATGGCACCGGTGCTTCCCGAACCAGACAGAAGCACCACCTCGGACGACGACAACGTGGAGCGACCAAAGTCAACGTACGACCGACCACCACGAAGCATTTTGAAACAGTCGCAGTCTCCGCTGTTGGGTAAGTCAAAGCTGCGAGTGTCGATCAACTTACCCGACAACGAGATTTCTCTGCGGCAAACGAGCTTCTCGGAGCACGAGAGAGCAAAAGGGTCGTGGAGTTTCAGCGAGGGAGTGGAGGGAGAGAGAAACAGGAAAACGGTGCTTGAAGTTCTTAGAGAGGTAAACGCCGACGTTTTGGGGTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCTGATTTGGCTCGAGCTTTGGGGATGAACTACGTCTTCGCCGAAAGCTGGGCCCCTCAATACGGCAACGCCGTTCTGTCAAAGTGGCCCATTAAACGCTGGAAGCTGCAGAAAATCTTCGACCACACCGATTTCAGGTACTCAGTAGGGAATGATTATGGTAATCTTAGTGGAAATCCAGCCTGTGAAAGGAATGTTCTGAAGGCCACTATCGATGTACCCGAAGAAGGTGAACTGTACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAGCAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGTTGGTGGTCTTAATTCGCTTGATGAATCAGATTATTCCCAAGAAAGATGGACAGATATTGTTAAGTACTACGAGGAGATGGGAAAGCCAACACCCAAGGTTGAAGTCATGAAATATCTCAAGAACAGGCACTACACAGATGCGAAGGACTTTTCAGGGGAATATGAGTCTGTTGTCATGATCGCCAAAGGACAAAGTGTCCAAGGTACGTGCAAGTATGGAACTCGGGTAGATTACATATTATCATCCTCAGATTCTCCATACCAATTTGTTTCAGGGTCTTACTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTAAAAGTGAATAGAAATCCTCAAGAAAATCTGACAGAGAAGCAGGAACAGCCACGACACAAAGTTCAGAGAATAAAATCAACTCCATCCAAATGTATATGGAAAACACAAACTGCAGATATAGATTGA 1356 0.4705 MLKLLNKNLRRLSSLLKWSLRRRSKSNPSFGNPTPKPHTQPRTSTPEPSPPPSRPIRIATFNAAFFSMAPVLPEPDRSTTSDDDNVERPKSTYDRPPRSILKQSQSPLLGKSKLRVSINLPDNEISLRQTSFSEHERAKGSWSFSEGVEGERNRKTVLEVLREVNADVLGLQDVKAEEENGMKPLSDLARALGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDHTDFRYSVGNDYGNLSGNPACERNVLKATIDVPEEGELYFYCTHLDHLDENWRMKQINAIIQSNDEPHILVGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKNRHYTDAKDFSGEYESVVMIAKGQSVQGTCKYGTRVDYILSSSDSPYQFVSGSYLVLSSKGTSDHHIVKVDVVKVNRNPQENLTEKQEQPRHKVQRIKSTPSKCIWKTQTADID 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02874 451 MobiDBLite consensus disorder prediction 23 38 - -
Vimu6g02874 451 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 54 426 - -
Vimu6g02874 451 MobiDBLite consensus disorder prediction 39 55 - -
Vimu6g02874 451 Gene3D Endonuclease/exonuclease/phosphatase 140 411 IPR036691 -
Vimu6g02874 451 FunFam Endonuclease/exonuclease/phosphatase family protein 142 412 - -
Vimu6g02874 451 Pfam Endonuclease/Exonuclease/phosphatase family 154 402 IPR005135 GO:0003824
Vimu6g02874 451 MobiDBLite consensus disorder prediction 77 95 - -
Vimu6g02874 451 SUPERFAMILY DNase I-like 52 409 IPR036691 -
Vimu6g02874 451 MobiDBLite consensus disorder prediction 70 106 - -
Vimu6g02874 451 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02874 Vimu-Chr6 25371936 25374522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02874 - - vra:106757483 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02874 6 25371936 25374522 Vimu6g02874 6 25371936 25374522 ECH
Vimu6g02874 6 25371936 25374522 Vimu3g01694 3 31074956 31078413 PCT