Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01694 ATGATTTCTCCAAGGCAAGATCCTCGTTTTTCACAGGCCGGCTTCTCCACCATGCTCAAGCTCCTCAACAAGAACATCCGCCGCCTCCTCCGCCGACTCCGGTGGCCAATTCGCCGCCGCTCGAAGCCCAAAGTAGTAGTGATCAGCAAGCTCGGAAAGAACGCCCCGAAGGCCCAAACTGAGCCAAGTCCAAACCTTTCCGCGACCGTTCATCCTAACGCGCAATTGGGTACTCCGAAGCCAATCCGGATCGCGACGTTCAACGCCGCGCTGTTCTCCATGGCCCCGGCGCTCCCGAAAGCTGCACGAGAGTCGGGGGAGCAAAAGGGCGTCGCTTCAAAGGCGAATTCGCGGCCGAGAAGCATATTGAAGCATTCGCCATCGCAGTCGCAATCAGTGAAGAACAGAGCAGAGGAGAACGTTGGTAGCAGACAGAAGATGAGGGTTTCCATAAATTTACCAGACAACGAGATTTCGCTGTTGCGAAGCCGACAATCGAGCTTCTCGGAACACGACAAGGAGGGGCTGAAGGCGTGGTCTGTAGGGGGAGGTGGGGCCCACATGAGTAACAGAACGGTTGTTGAGGTTCTGAAGGAAGTGAACGCAGATGTTTTGGGTCTGCAAGATGTGAAGGCTGAGGAAGAGAATGGGATGAAGCCTTTGTCTGATTTGGCTGCGGCGCTGGGAATGAACTACGTCTTCGCCGAAAGCTGGGCACCTGAGTACGGCAATGCTGTCTTGTCCAAATGGCCCATCAAACGCTGCGTCTCTCACCAAATCTTCGATCATACTGATTTCAGGAATGTTTTGAAGGCAACAATCGATGTGCCTCAAGTAGGTGAGCTTAACTTCTACTGTACCCATCTTGATCATCTTGATGAGAATTGGCGAATGAAGCAGGTAAATGCAATAATTCAATCCAGTGATGAGCCTCACATCTTAGCTGGAGGCCTTAATTCACTGGATGAATCAGATTACTCCCAAGAAAGATGGACAGATATTGTGAAGTACTATGAAGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAATATCTCAAGAGTAAAGACTACACTGATGCAAAGGATTATGCAGGGGAATGCGAGTCTGTTGTCATGATTGCCAAGGGCCAAAGTGTTCAAGGCACATGTAAGTATGGAACAAGGGTAGATTACATATTATCATCATCAAATTGTCCATACAAGTTTGTTCCTGGTTCCTATTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTGAAGGCAAATGACAACCCTGAAGAAAAGGTGACAAAGAATACGCAACAACCAAGACAGAGAGTTGTAAAAATAACACAATCCACACCCTCAAAAGGTATCTGGAAAACTCACACTTGA 1401 0.4847 MISPRQDPRFSQAGFSTMLKLLNKNIRRLLRRLRWPIRRRSKPKVVVISKLGKNAPKAQTEPSPNLSATVHPNAQLGTPKPIRIATFNAALFSMAPALPKAARESGEQKGVASKANSRPRSILKHSPSQSQSVKNRAEENVGSRQKMRVSINLPDNEISLLRSRQSSFSEHDKEGLKAWSVGGGGAHMSNRTVVEVLKEVNADVLGLQDVKAEEENGMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRCVSHQIFDHTDFRNVLKATIDVPQVGELNFYCTHLDHLDENWRMKQVNAIIQSSDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSKDYTDAKDYAGECESVVMIAKGQSVQGTCKYGTRVDYILSSSNCPYKFVPGSYLVLSSKGTSDHHIVKVDVVKANDNPEEKVTKNTQQPRQRVVKITQSTPSKGIWKTHT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01694 466 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 77 446 - -
Vimu3g01694 466 MobiDBLite consensus disorder prediction 56 74 - -
Vimu3g01694 466 SUPERFAMILY DNase I-like 179 427 IPR036691 -
Vimu3g01694 466 Gene3D Endonuclease/exonuclease/phosphatase 178 430 IPR036691 -
Vimu3g01694 466 MobiDBLite consensus disorder prediction 110 138 - -
Vimu3g01694 466 MobiDBLite consensus disorder prediction 50 78 - -
Vimu3g01694 466 FunFam Endonuclease/exonuclease/phosphatase family protein 178 430 - -
Vimu3g01694 466 Pfam Endonuclease/Exonuclease/phosphatase family 181 420 IPR005135 GO:0003824
Vimu3g01694 466 MobiDBLite consensus disorder prediction 101 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01694 Vimu-Chr3 31074956 31078413 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01694 - - gmx:100801298 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01694 3 31074956 31078413 Vimu3g01694 3 31074956 31078413 ECH
Vimu6g02874 6 25371936 25374522 Vimu3g01694 3 31074956 31078413 PCT