Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02861 ATGGGTAAGATTCTCCGAGAAACCGCCAAGCCGTCGGCGAATTCTTCATCGGCGTCCCCCTCTTCGGCGGCGCCCGCCACCACGTCTTCCACGTCGGTGACGGAGACCGTGAGAGGCTCGCACCAGTTCAAGATCACGGGCTACTCCCTCTCCAAGGGGATCGGGATTGGAAAGTACATGGCCTCCGACGTGTTTTCCGTTGGAGGGTACGATTGGGCGATTTATTTCTACCCCGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCTCTGGCTAGCGACGGCACCGACGTTAGGGCACTTTTCGAGTTAACCCTTTTGGATCAGAGTGGCAAGGAGAGGCACAAGGTGCATAGCCATTTC 378 0.5741 MGKILRETAKPSANSSSASPSSAAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02861 126 ProSiteProfiles MATH/TRAF domain profile. 38 126 IPR002083 GO:0005515
Vimu6g02861 126 MobiDBLite consensus disorder prediction 1 36 - -
Vimu6g02861 126 CDD MATH 39 124 IPR002083 GO:0005515
Vimu6g02861 126 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 126 IPR008974 GO:0005515
Vimu6g02861 126 SUPERFAMILY TRAF domain-like 35 123 - -
Vimu6g02861 126 MobiDBLite consensus disorder prediction 9 36 - -
Vimu6g02861 126 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 124 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02861 Vimu-Chr6 25294344 25295110 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02861 K10523 - gmx:102668882 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02861 6 25294344 25295110 Vimu6g02861 6 25294344 25295110 ECH
Vimu6g02861 6 25294344 25295110 Vimu3g01678 3 30846244 30847768 PCT