Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01678 ATGGGTAAGATTCTGAGAGAAACCGCGAGGCCGTCCTTTACTTGTTCGTCGGCGTCACCGTCGTCAGCGCCACCGGCGACGACATCGTCGACGTCGGTGACCGACACCGTGAGGGGATCGCATCGGTTCAAGATCACGGGGTATGCTCTGTCGAAGGGGATTGGGATTGGGAAGTATATAGCGTCTGATATATTTTCGGTGGGAGGGTACGATTGGGCGATCTATTTTTATCCTGATGGGAAGAGCGTGGAGGACAATGCTACGTACGTTTCTCTCTTCATCGCGCTGGCTAGCGAAGGGGCAGATGTTAGAGCGCTTTTTGAGTTGACCCTTTTGGATCAGAGTGGGAAGGAGAGGCATAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGTGGACCTTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTGCCTTAGCGTTAATTGTAGTGTTGGTGTAGTGAAATCACACACAGAGGGCCCCAAAATTTATAAAATTCCAATTATGCCTTCTAACATTGGTCAGCAACTTGGGAAGCTTTTAGAAAGTGGGAAAGGCAGTGATGTGAGTTTTGAAGTGAATGGAGAAGTTTTTGCTGCTCATAAATTGATACTAGCTGCTCGCTCACCAGTTTTCAGGGCCCAACTTTTTGGTCCTATGAAAGATCAGAATACCCGTTGTATAAAAATTGAAGACATGGAGGCTCCAGTTTTCAAGGTTTGA 786 0.4695 MGKILRETARPSFTCSSASPSSAPPATTSSTSVTDTVRGSHRFKITGYALSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASEGADVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYKIPIMPSNIGQQLGKLLESGKGSDVSFEVNGEVFAAHKLILAARSPVFRAQLFGPMKDQNTRCIKIEDMEAPVFKV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01678 261 MobiDBLite consensus disorder prediction 10 34 - -
Vimu3g01678 261 MobiDBLite consensus disorder prediction 1 34 - -
Vimu3g01678 261 SUPERFAMILY TRAF domain-like 35 174 - -
Vimu3g01678 261 Pfam MATH domain 58 172 IPR002083 GO:0005515
Vimu3g01678 261 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 176 IPR008974 GO:0005515
Vimu3g01678 261 CDD MATH 39 172 IPR002083 GO:0005515
Vimu3g01678 261 ProSiteProfiles BTB domain profile. 208 261 IPR000210 GO:0005515
Vimu3g01678 261 Pfam BTB/POZ domain 199 260 IPR000210 GO:0005515
Vimu3g01678 261 SUPERFAMILY POZ domain 185 260 IPR011333 -
Vimu3g01678 261 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 28 260 IPR045005 GO:0016567
Vimu3g01678 261 SMART math_3 43 155 IPR002083 GO:0005515
Vimu3g01678 261 Gene3D Potassium Channel Kv1.1; Chain A 177 261 IPR011333 -
Vimu3g01678 261 ProSiteProfiles MATH/TRAF domain profile. 38 172 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01678 Vimu-Chr3 30846244 30847768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01678 K10523 - gmx:100799666 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01678 3 30846244 30847768 Vimu3g01678 3 30846244 30847768 ECH
Vimu6g02861 6 25294344 25295110 Vimu3g01678 3 30846244 30847768 PCT