Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02852 ATGGGTGCTGCGGAATCAGTCTCGGAAAATTCCATCCATGAATTCTCGGTCAAGGATCCCAAGGGAAGAGACGTGAACCTCACCACCTACAAGGGGAAGGTTCTGCTTGTAGTTAACGTTGCTTCAAAATGTGGATTTACGAATTCGAATTACACCCAGTTAACTGAGCTTTACAGCAGATACAAAGACAAAGGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTTTGAAGCAACAGCCGGGGAATAGCCTGGAGGCAGAGCAATTTGCCTGTACAAGGTACAAGGCCGAATATCCCATTTTTGGAAAGATACGTGTCAATGGACCTAATACAGCACCTGTCTACAAATTCCTTAAAGCAAATAAATCAGGATTTTTGGGTTCTAGGATAAAGTGGAATTTCACCAAGTTTCTGGTTGACAAGGAAGGGAAAGTCCTAAAGCGTTATGGTCCAACCACCTCACCGCTGTCCATTGAAGTACTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATAACGACATCAAGAGGGCATTGGGGGAGGCTTGA 552 0.4457 MGAAESVSENSIHEFSVKDPKGRDVNLTTYKGKVLLVVNVASKCGFTNSNYTQLTELYSRYKDKGLEILAFPCNQFLKQQPGNSLEAEQFACTRYKAEYPIFGKIRVNGPNTAPVYKFLKANKSGFLGSRIKWNFTKFLVDKEGKVLKRYGPTTSPLSIEVLLSLSLSLSLSYNDIKRALGEA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02852 183 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 SUPERFAMILY Thioredoxin-like 11 164 IPR036249 -
Vimu6g02852 183 PANTHER GLUTATHIONE PEROXIDASE 7 160 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 FunFam Glutathione peroxidase 3 168 - -
Vimu6g02852 183 ProSiteProfiles Glutathione peroxidase profile. 2 183 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Vimu6g02852 183 PIRSF Glutathion_perox 1 169 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 Gene3D Glutaredoxin 3 167 - -
Vimu6g02852 183 CDD GSH_Peroxidase 11 160 IPR000889 GO:0004602|GO:0006979
Vimu6g02852 183 ProSiteProfiles Thioredoxin domain profile. 1 171 IPR013766 -
Vimu6g02852 183 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02852 Vimu-Chr6 25221874 25225818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02852 - K00432 gmx:100306136 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02852 6 25221874 25225818 Vimu6g02852 6 25221874 25225818 ECH
Vimu6g02852 6 25221874 25225818 Vimu3g01669 3 30774917 30777239 PCT