Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01669 ATGGGTGCTTCTCAATCAATCTCAGAAAATTCTATCCACGAATTCAGTGTAAAGGATGCGAGGGGCAAAGATGTGAATCTAAACGCTTACAGGGGAAAAGTTCTTCTTGTAATTAATGTTGCTTCAAAATGTGGATTTGCTGATGCCAATTACACACAGTTAACTCAGCTTTATTCGACATACAAGAGCAGTGGTCTTGAGATATTGGCATTTCCATGTAATCAATTTTTGAAGAAAGAGCCTGGAACTAGCATTGAGGCACATGACTTTGCATGTACAAGATATAAGGCTGAGTATCCAATTTTTGGGAAGATACGTGTGAATGGATCAGAGAGTGCACCGGTTTTCAAATTCCTGAAAGCACAGAAATCTGGATTTGTGGGATCTAGAATCAAATGGAATTTCACTAAGTTTTTAGTTGATCAAGAAGGCCACGTCATCAACCGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAGTAACACATCTTCTCAATCTCTTTCATGATTTGACATACAATAAGGAGATAACCCTAATTATATAA 546 0.381 MGASQSISENSIHEFSVKDARGKDVNLNAYRGKVLLVINVASKCGFADANYTQLTQLYSTYKSSGLEILAFPCNQFLKKEPGTSIEAHDFACTRYKAEYPIFGKIRVNGSESAPVFKFLKAQKSGFVGSRIKWNFTKFLVDQEGHVINRYSPTTKPLAIEVTHLLNLFHDLTYNKEITLII 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01669 181 FunFam Glutathione peroxidase 3 169 - -
Vimu3g01669 181 SUPERFAMILY Thioredoxin-like 11 160 IPR036249 -
Vimu3g01669 181 Gene3D Glutaredoxin 3 166 - -
Vimu3g01669 181 PIRSF Glutathion_perox 1 170 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 CDD GSH_Peroxidase 11 160 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
Vimu3g01669 181 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Vimu3g01669 181 PANTHER GLUTATHIONE PEROXIDASE 6 160 IPR000889 GO:0004602|GO:0006979
Vimu3g01669 181 ProSiteProfiles Glutathione peroxidase profile. 2 174 IPR000889 GO:0004602|GO:0006979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01669 Vimu-Chr3 30774917 30777239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01669 - K00432 gmx:102659700 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01669 3 30774917 30777239 Vimu3g01669 3 30774917 30777239 ECH
Vimu6g02852 6 25221874 25225818 Vimu3g01669 3 30774917 30777239 PCT