Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02847 ATGGCATTTATGTTCTCAACGTTCGATCACCAACCACAGCGTCTTCATCTCCCAACGGAACCTTCGAAAATGCCTCTTTCATCTCTCTGCAGCAGGTTATCGTTCTTATCCATCTCCCTCTTCTTGTCTCTAACACCCACACTCCAAATCCCCTTGGTAGCCCCAATCACAAAAGACCCTTCCACCCAACTCTACGCACTCTCCCTCTTCCTCAAAACCCCGCTCCAGCATACCACACTCCACCTCGACCTCGGTTCCTCCCTTACCTGGCTTCTCTGCGACTCCACCTATACCTCCTCCTCCTCCCACCACATCCCCTGCAACACCTCCCTATGCGACTCCTTCCCTGCTAACGCCTGCTCCAACGACACATGCGCTCTCTTCCCTGAAAACCCTCTCACAAGAACCACCCTTCTCGACACCGCCCTCATCGATTCTCTCGCCCTTCCAACCTACGACACCTCCTCTCAGAGCCCACTCGTTCTCATTTCCGATTTCATCTTCTCCTGCGCCGTCGCCCATTTACTCCAAGGCCTCGCTACCAATGTGACCGGACTAGCCGCTTTGGGCCGGTCCAATAACTCCCTCCCGGCCCAAATAAGCATTGCATTGAGTTCCCCTCATTCTTTCTCTCTCTGCTTGCCTGCTTCGTCCAACACAGGCGCAGCTATCTTCGCCTCCACCTCCATCTCTTACTTTTTCTCTTCCAAAATTGACCTCACTTACACCCCACTCATTCTTAACCCCGTCGCCGACACTGTCGTCACCCACAACTCACAACCCTCCGATGAGTATTTCATAAACGTCACCTCCATCAAGATCAACGGCAAGGCTCTTCCCATCGACGCCTCCATCTTAACCGTTGATCAAACCGGCTTCGGTGGGACCAAGATCAGCACTGCGGAGCCCTACACAGTTTTGGAAAGTTCCATTTACAAACTCTTCGTCCGGTTTTTCGTCAACGAAGCCTCAGCTTTTAACTTAACGGTGACGGAGGCCGTTGAGCCCTTTGGCGTTTGCTACTCGGCGGGAGACCTCACGGAGACAAGAGTGGGACCCGCTGTTCCGACCGTTGATCTGGTGATGCACAGCGAGGAAGTGTTTTGGAGAATCTTCGGGGGGAATTCGATGGTGAGGATTGAAAAGGGAGGAGTGGATGTGTGGTGTTTGGGTTTCGTGGATGGTGGGATTCGTAGGAGGACGGCGGTGGTGATTGGAGGGCATCAAATGGAGGATAATGTAGTGCAGTTTGATCTTGACTCAAATAGATTTGGTTTCACCTCATCTCTGTTGCTCCAGGGTGCCAAGTGTGCTAATCTCAATTTCACTAATCTTACCAATTCCATTAATTAG 1353 0.5188 MAFMFSTFDHQPQRLHLPTEPSKMPLSSLCSRLSFLSISLFLSLTPTLQIPLVAPITKDPSTQLYALSLFLKTPLQHTTLHLDLGSSLTWLLCDSTYTSSSSHHIPCNTSLCDSFPANACSNDTCALFPENPLTRTTLLDTALIDSLALPTYDTSSQSPLVLISDFIFSCAVAHLLQGLATNVTGLAALGRSNNSLPAQISIALSSPHSFSLCLPASSNTGAAIFASTSISYFFSSKIDLTYTPLILNPVADTVVTHNSQPSDEYFINVTSIKINGKALPIDASILTVDQTGFGGTKISTAEPYTVLESSIYKLFVRFFVNEASAFNLTVTEAVEPFGVCYSAGDLTETRVGPAVPTVDLVMHSEEVFWRIFGGNSMVRIEKGGVDVWCLGFVDGGIRRRTAVVIGGHQMEDNVVQFDLDSNRFGFTSSLLLQGAKCANLNFTNLTNSIN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02847 450 FunFam Basic 7S globulin 230 444 - -
Vimu6g02847 450 Pfam Xylanase inhibitor N-terminal 65 225 IPR032861 -
Vimu6g02847 450 SUPERFAMILY Acid proteases 56 432 IPR021109 -
Vimu6g02847 450 Gene3D Acid Proteases 47 226 IPR021109 -
Vimu6g02847 450 Gene3D Acid Proteases 230 444 IPR021109 -
Vimu6g02847 450 ProSiteProfiles Peptidase family A1 domain profile. 65 427 IPR033121 -
Vimu6g02847 450 Pfam Xylanase inhibitor C-terminal 264 427 IPR032799 -
Vimu6g02847 450 PANTHER ASPARTYL PROTEASE-RELATED 35 444 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02847 Vimu-Chr6 25168983 25172006 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02847 - - gmx:100800584 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02847 6 25168983 25172006 Vimu6g02847 6 25168983 25172006 ECH
Vimu6g02847 6 25168983 25172006 Vimu3g01649 3 30608365 30609651 PCT