Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01649 ATGCGTCTCATTGCTCTCTTCCAACTTTTCCTCATTGCACCCTCTTTCGCTCAACAATCTTTCAGGCCCAAAGCCCTCGTTGTCCCCATTACAAAACATGCATCAACTCTCCAATATCTAACTCAAATCAACCAAAGAACTCCTCTTCTCCCCCTAAACCTTGTGCTTGACATAGGAGGCCAATTCCTCTGGGTCGACTGCGACACCAACTATGTCTCCTCCACTTACCGCCGTGCACGCTGCCGCTCCGCCCAGTGCTCCCTCGCCAGATCCACCTCCTGCGGGGACTGCTTTTCCGCCCCCAGACCCGGCTGCAACAACAACACGTGCGGCCTCATCCCGGACAACACCATCACCCACACCGCTACCTCCGGCGAACTTGCTGAAGATACCATCTCCGTCCAATCCACCAACGGCTTCAACCCCGCCCCCACCTTCCTACTCCAAGGTCTCGCCACTGGAGTCTCCGGCATGGCCGGTCTTGGCAGGACGAAAATCGCTCTTCCCTCACAGTTCGCTTCCGCGTTCAGCTTCCACAGGAAATTCGCCGTCTGCCTCTCCTCCTCAAAAGGCGTCGCTTTCTTCGGCGACGGCCCTTACGTTCTACTCCCCAACATTGACGCCGCTCAGTTACTCACCTTCACCCCTCTGTTAGTCAACCCCGTCAGCACCGCTTCTGCTTTCTCCCAGGGAGAACCCTCCGCCGACACGACTTTGCTATCCATAAACAGCGAAGGCGTTGGCGGAACCAAGATCAGTTCCGTTAACCCCTACACCGAGTTGGAGGCTTCGATCTTCAAAGCAGTGACGGAGGCTTTTGTAAAAGCGTCTGCTGCGAGGAACATAACGAGGGTGGCTGGAGTGGCACCGTTTGAAGTGTGTTTCAGCAGTAACAACGTGGTGGGCACTCGGTTAGGCGCGTCGGTGCCAACCATTGAGCTTGTTCTGCACAACCAGAAGACTATTTGGAGGATTTTCGGAGCGAACTCGATGGTGAGTGTGAGCGATGACGTGCTTTGTCTCGGATTCGTGAATGGTGGTGAGAAGCCGAGGACTTCGATTGTGATTGGTGGGTATCAACTTGAGAATAATCTCTTGCAGTTCGATTTGGCCGCTTCAAGGTTGGGTTTCAGTTCTTTGCTCTTTGGAAGCCGAACTACATGCGCAAACTTCAACTTTACCTCCACCGTCTAA 1194 0.541 MRLIALFQLFLIAPSFAQQSFRPKALVVPITKHASTLQYLTQINQRTPLLPLNLVLDIGGQFLWVDCDTNYVSSTYRRARCRSAQCSLARSTSCGDCFSAPRPGCNNNTCGLIPDNTITHTATSGELAEDTISVQSTNGFNPAPTFLLQGLATGVSGMAGLGRTKIALPSQFASAFSFHRKFAVCLSSSKGVAFFGDGPYVLLPNIDAAQLLTFTPLLVNPVSTASAFSQGEPSADTTLLSINSEGVGGTKISSVNPYTELEASIFKAVTEAFVKASAARNITRVAGVAPFEVCFSSNNVVGTRLGASVPTIELVLHNQKTIWRIFGANSMVSVSDDVLCLGFVNGGEKPRTSIVIGGYQLENNLLQFDLAASRLGFSSLLFGSRTTCANFNFTSTV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01649 397 Gene3D Acid Proteases 18 196 IPR021109 -
Vimu3g01649 397 CDD xylanase_inhibitor_I_like 44 381 IPR033868 -
Vimu3g01649 397 PANTHER ASPARTYL PROTEASE-RELATED 9 395 IPR001461 GO:0004190|GO:0006508
Vimu3g01649 397 SUPERFAMILY Acid proteases 30 387 IPR021109 -
Vimu3g01649 397 Gene3D Acid Proteases 198 395 IPR021109 -
Vimu3g01649 397 Pfam Xylanase inhibitor N-terminal 39 197 IPR032861 -
Vimu3g01649 397 FunFam Basic 7S globulin 234 395 - -
Vimu3g01649 397 Pfam Xylanase inhibitor C-terminal 236 378 IPR032799 -
Vimu3g01649 397 ProSiteProfiles Peptidase family A1 domain profile. 39 378 IPR033121 -
Vimu3g01649 397 FunFam Basic 7S globulin 19 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01649 Vimu-Chr3 30608365 30609651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01649 26 379 Miscellaneous Gene Families AT1G77480 22.798 1.13e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01649 - - vun:114190071 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01649 3 30608365 30609651 Vimu3g01649 3 30608365 30609651 ECH
Vimu6g02847 6 25168983 25172006 Vimu3g01649 3 30608365 30609651 PCT