Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02834 ATGGCAAATCAGTCAAGCTTCGGCGGTAGCAGTGGAGTTCGAGTAGTGGTCACCGGCGACCGCGCCACTGGAAAATCGAGCCTGATAGCTGCCATCGCGACGGAGTCATTTGCCGAGTCCATTACGCCGGTTATTCCGCCCACTCTCTTGCCCCCCGATTTGTTCCCCGACAAGGTTCCTCTTACCGTCATTGACACATCTTCCAGCTTGGACAAACAAAGCAAGCGTAACGAAGAGTTAAAAAGAGCTGATGTTGTGGTTTTAACCTATGCTTGCAACGACACGGCTTCGTTTTCTCGGTTGAGTTCTTACTGGTTCCCGGAACTGCATAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACCCAGCTACTGCAACAGTTCAAGGAAATTGTCACATGCATTGAATGCTCTGCTGCTACGCAATACCAGGGTTCTATCTTATTTTCTTGCTCACCTATCGGTCGATGCTATAGATTGTATCACGTCCATTCATTACAGTTTACAGCGTGCCTGAATTTAATGTTAATTCTAATATTTCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTGCATCCAGTAGATCCATTGTATAATATTGGAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTCAATGAAGCAGAACTAAATGATTTTCAGGTTAGATGTTTCAATGTACCATTGCAATCATCTGAAATGGCTGAGGTCAAATCAGTTGTACAGCAGAAAGTACCAGAAGGGGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTGTGTTCATAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTCCTAAGAAACTTTGGATATGATAATAATTTGAAACTGAAGGATGATTTCCTTCCTGTTCCGGCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTATTAGATTCAGATAAAGATCGAGCCCTACGACCTGCTGAAATTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCTTGGAATGATGCTCCGTATAAGGATTCTGCTGAGATGAATGACATGGGTTACATATCTCTTAATGGATTCCTGTCACAGTGGACCCTTATGACATTACTTGATCCACCCTGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCGGCAGCAGCTCTCCGTGTTACTCGGAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAGTTCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCGTTCTCAAACAATTATATTCCATCTACAGTTGAAAGGTTTGCAGTAAATGCCGTTGAATTAATTGGGGGAGCCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTAAAGTATCAAATGTTTTGTCAAATAAGGACTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACTTTCATGGAGGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGAGAAGGAGATCTAACGGGTTATAGAGTTCCTTGCCTCCTTATTGCTGCTAAGGATGATTTAACGCCATATCCAAGGGCAGTACAAGATTCGGTAAAGGTTACTCAAGAATTGGGAATAGAGGCACCTATTCACGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACAATAAGATTGTCCATGCTGCTGTGCACCCTCATTTAAGCATTCCGGAAACTGAGATTGGCAAGAAAAGAAAACAATACCATCGGCTTCTTCAGCACTCGCTTGTTTTTGCCTCAGTTGGGACTGCAATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTGAAGAAGAATTCGTCTGGTTAG 2043 0.4298 MANQSSFGGSSGVRVVVTGDRATGKSSLIAAIATESFAESITPVIPPTLLPPDLFPDKVPLTVIDTSSSLDKQSKRNEELKRADVVVLTYACNDTASFSRLSSYWFPELHKLEVKVPVIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQGSILFSCSPIGRCYRLYHVHSLQFTACLNLMLILIFQVPEVFYFAQKAVLHPVDPLYNIGSQALTDRCVRALRRIFVLCDRDMDEALNEAELNDFQVRCFNVPLQSSEMAEVKSVVQQKVPEGVNSLGLTFPGFICVHNMFLKKGRPETLWAVLRNFGYDNNLKLKDDFLPVPAKRALDQSVELTGEAVEFLNGIFRLLDSDKDRALRPAEIDKLFCTAPESPWNDAPYKDSAEMNDMGYISLNGFLSQWTLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKSSGKSALLDSLLGRPFSNNYIPSTVERFAVNAVELIGGARKTLVLREIPESKVSNVLSNKDYLAACDVAVFVYDSSDELSWRKSRDLLEKVAREGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVHAAVHPHLSIPETEIGKKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02834 680 SMART ras_sub_4 10 180 - -
Vimu6g02834 680 FunFam Mitochondrial Rho GTPase 525 626 - -
Vimu6g02834 680 Pfam Ras family 14 163 IPR001806 GO:0003924|GO:0005525
Vimu6g02834 680 Gene3D - 222 326 - -
Vimu6g02834 680 Pfam EF hand associated 266 349 IPR013567 -
Vimu6g02834 680 Pfam EF hand associated 387 454 IPR013566 -
Vimu6g02834 680 SUPERFAMILY EF-hand 215 415 IPR011992 -
Vimu6g02834 680 Gene3D - 524 626 IPR027417 -
Vimu6g02834 680 ProSiteProfiles Miro domain profile. 10 214 IPR020860 GO:0003924|GO:0005525
Vimu6g02834 680 ProSiteProfiles Miro domain profile. 458 627 IPR020860 GO:0003924|GO:0005525
Vimu6g02834 680 FunFam Mitochondrial Rho GTPase 222 326 - -
Vimu6g02834 680 PANTHER RHO FAMILY GTPASE 462 629 IPR003578 GO:0005525|GO:0007264
Vimu6g02834 680 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Vimu6g02834 680 Gene3D - 328 518 - -
Vimu6g02834 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 632 IPR027417 -
Vimu6g02834 680 SMART rab_sub_5 13 169 - -
Vimu6g02834 680 CDD Miro2 457 639 - -
Vimu6g02834 680 PIRSF Miro 187 680 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vimu6g02834 680 PIRSF Miro 9 172 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vimu6g02834 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 163 IPR027417 -
Vimu6g02834 680 Gene3D - 9 212 IPR027417 -
Vimu6g02834 680 FunFam Mitochondrial Rho GTPase 328 518 - -
Vimu6g02834 680 PRINTS Transforming protein P21 ras signature 114 127 - -
Vimu6g02834 680 PRINTS Transforming protein P21 ras signature 13 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02834 Vimu-Chr6 25041364 25050516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02834 1 678 EF-hand Containing Proteins AT3G63150 54.425 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02834 K07870 - gmx:100803790 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02834 6 25041364 25050516 Vimu3g01638 3 30479487 30484500 PCT