Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01638 ATGCAACAGTTCACAGAAATTGTCACTTGTGTTGAATGCTCTGCTGTTACACTTTTCCAGGTCCCAGAAGTTTTTTATTTTGCCCTAAAAGCAGTACTACATCCAGTAGATCCATTGTTTGATTATAAAAGACATGGTTTGACAGATCCATGTGTGAGGGCTTTAAGAAGAATATTTATTCTATGCGATCAAGACATGGATGGTGCTCTCAATGATGAAGAGCTAAATGAGTTTCAGGTTAAATGCTTCAATGCAGCATTGCAGCCATCTGAAATAGTAAAAGTCAAATCGATTGTGCAGCAGAAAGTACCTGACGGAGTCAACTCTGTTGGTCTTACATTTCCAGGTTTTATTTATGTCCATAACATGTTTCTAAAGAAAGGGCGAACAGAGACATTGTGGGCCGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTTCGGGATGATTTCCTTCCAGTTCCATCTATGCATGCTTCTGATAAGAGTGTGGAGCTGACATGTGAAGCCGTAGAGTTTCTGAATGATATCTTTCAATTGTTAGATACAGATAAAGATCTAACTCTACGACCTGCCGAAGTTGATAACCTATTTGATACTGCTCCAGAAAGACAAGGGCTTCTTGGACTATTATTGACAGCCTCAATTGAATACTCGCTTCTTGAACTTGCTAATGTTAGCGCTTTATATGTGTTGTGTTGGGAGGTTTTATGCAACTTTGCAATGCGTCCATGGAACAATGCCCCATATAAGGATGCAGCAGAGAAAACTGATATGGGCTATATCTCTCTAAATGGATTTCTGTCTCAGGTGCTTACTTTATACTTTTCTTCTTCAACCTTTACCATTGATGGATACTGA 864 0.3854 MQQFTEIVTCVECSAVTLFQVPEVFYFALKAVLHPVDPLFDYKRHGLTDPCVRALRRIFILCDQDMDGALNDEELNEFQVKCFNAALQPSEIVKVKSIVQQKVPDGVNSVGLTFPGFIYVHNMFLKKGRTETLWAVLRKFGYDNDLKLRDDFLPVPSMHASDKSVELTCEAVEFLNDIFQLLDTDKDLTLRPAEVDNLFDTAPERQGLLGLLLTASIEYSLLELANVSALYVLCWEVLCNFAMRPWNNAPYKDAAEKTDMGYISLNGFLSQVLTLYFSSSTFTIDGY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01638 287 SUPERFAMILY EF-hand 38 202 IPR011992 -
Vimu3g01638 287 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Vimu3g01638 287 Gene3D - 42 146 - -
Vimu3g01638 287 PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7 47 150 - -
Vimu3g01638 287 FunFam Mitochondrial Rho GTPase 42 146 - -
Vimu3g01638 287 Pfam EF hand associated 86 169 IPR013567 -
Vimu3g01638 287 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Vimu3g01638 287 Gene3D - 148 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01638 Vimu-Chr3 30479487 30484500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01638 1 271 EF-hand Containing Proteins AT3G63150 48.339 6.52e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01638 K07870 - gmx:100806983 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02834 6 25041364 25050516 Vimu3g01638 3 30479487 30484500 PCT