Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02819 ATGGAGCTTAGCAAGGTAACGCTCGAGATCTTCTCCAAACTCGAGCAGCAATGGCTTTCCCACTACGAAGTCACATCCAAAACCCGCATTCTCAGTATCGACGGTGGAGGAACCACCGCCATTGTCTCCGGCGCAGCCCTCATCCACCTCGAGGACCAGATCCGAGCCCAAACCAGCGATCCCCACGCGCAAATCGCTGATTATTTCGACATCATCGCCGGAACCGGCATTGGCGCCATCCTGGCCGCCATGATTACCGCCGACGACGGCTTCGGTCGGCCTCTCTACACTGCCCGCGACGCTGTCCACTTCCTCGCCGAGAGCAATAGCGAACTGTTCAAGCCGAAGCGCTCCGGCGTGTTCCGCCGCCGCCGCCGATTCTCAGCGCGGAGCATGGAAAACGCGCTGAAGCGGATTTTCCAAAGAAAAGAGGAAGAGCGACGGCTGTTGACTATGAAGGACACGTGTAAGCCTCTGCTCATTCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTTGTGTTCTCCCGAGCCGACGCATCCGAGTCACCGAGTTTCAACTTCGACCTTTGGAAGGCGTGCCGAGCCACTTCAGCCACGCCTGGCCTCTTCGCGCCATTCCATTTCGCCTCCGTCGACGGCAAGACCTCGTGCGCCGCCGTTGACGGCGGCCTGGTGATGAATAACCCGGCTGCAGCGGCCGTCACGCACGTCCTCCACAATAAGCGCGACTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTCGTACTCTCAATCGGAAACGGAGCGCCGGCTAAGAGAATAAACACAGCCGGCGAGTGCTCCACGTCGACGGTGGTTGACATTGCGCTCGACGGCGTTTCAGAAACCGTTGACCAGATGTTAGGGAACGCCTTCTGTTGGAACCGTACGGATTATGTCAGGATTCAGGCGTTCGGTTTGGGAGAAGGAAAAGAAGAGAAGGTGTTGAACGAGAGAGTGTTGGAATCGTTACCGTTTGGTGGAAAACGATTACTGCAAGAAACTAACGCTAACAGAATCGAAAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAGACTAGTCTGCCACCTAGTCCCTGCAAGTTCCATGTGACTGTTAATTCCCAAAATGGCTGCGTGATTCGCGGAGTGGGAGCACCACGACTTGGCTCGTGA 1173 0.5652 MELSKVTLEIFSKLEQQWLSHYEVTSKTRILSIDGGGTTAIVSGAALIHLEDQIRAQTSDPHAQIADYFDIIAGTGIGAILAAMITADDGFGRPLYTARDAVHFLAESNSELFKPKRSGVFRRRRRFSARSMENALKRIFQRKEEERRLLTMKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFDLWKACRATSATPGLFAPFHFASVDGKTSCAAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRINTAGECSTSTVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGKEEKVLNERVLESLPFGGKRLLQETNANRIESFVQRLVATGKTSLPPSPCKFHVTVNSQNGCVIRGVGAPRLGS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02819 390 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Vimu6g02819 390 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Vimu6g02819 390 Gene3D Cytosolic phospholipase A2 catalytic domain 19 361 - -
Vimu6g02819 390 PANTHER PATATIN-LIKE PROTEIN 6 1 367 - -
Vimu6g02819 390 SUPERFAMILY FabD/lysophospholipase-like 26 315 IPR016035 -
Vimu6g02819 390 CDD Pat17_PNPLA8_PNPLA9_like 30 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02819 Vimu-Chr6 24864678 24866324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02819 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 70.241 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02819 - - gmx:100806989 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02819 6 24864678 24866324 Vimu6g02819 6 24864678 24866324 ECH
Vimu6g02819 6 24864678 24866324 Vimu3g01628 3 30335237 30336521 PCT