Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01628 ATGGAGCTCAGTAAACTCACCCTAGAGATCTTCTCCAAACTCGAACACAAATGGCTCTCACATTGTAAACCCAACAACAAAACCCGCATTCTCAGCATTGACGGCGGAGGGACCACCGCCATTGTCGCCGGCCAAGCTCTTATCCACCTCGAGGATCAGATCCGTCTCCGCACCTCCGATCCCCAAGCTCAGCTCGCCGATTTCTTCGACATCGTCGCCGGCACTGGCATTGGCGCTATCCTCGCCGCCATGATCACCTCCGCCGACGCCTTCGGCAGGCCGATGTATACCGCCAGAGAAGCCGTCCGTCTAGTCTCCGAGAGGAACTCCGAACTCTACAAGTTCAAATCCGGAGGCGTGTTCCGCCGGCGCCGGAAATTCTCCTCCAGTAGCATGGACAACGTATTGAAGCAAGTGTTCCAGAGGAAGGAGGACGGACGGTTGTTGACCTTGAAGGACACGTGTAAACCGCTTCTTATCCCTTGCTTCGACCTCAAGAGTTCCGCGCCCTTCGTCTTTTCGCGCGCCGACGCGTCCGAGTCTCCGAGCTTCGACTTCGAGCTCTGGAAGGTGTGTCGCGCCACGTCAGCGACGCCGAGCCATTTCAAGCCGTTCAACTTGGCTTCCGTCGACGGCAAGACCTTGTGCTCCGCCGTGGACGGCGGCCTGGTGATGAACAACCCCACGGCGGCTGCCGTGACGCACGTTCTCCACAACAAGCACGATTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTGGTCCTTTCCTTGGGAAACGGATCGTCCAACACCAAAGCGTGCGAGAACAGCACGTGCTCCACACCATCGGTGGTTGACATTGTGCTCGACGGCGTTTCCGAGACCATTGACCAGATGTTGGGTAACGCCTTCTGTTGGAACCGTACGGACTACGTCAGAATCCAGGCCTTCGGTTTGGGAAGCAAAGCAGTGAGGAAGGAGGAGGTGCTCAAAGAGAGAGGACTGGAGTCGCTACCGTTTGGCGGGAAGCGCTTACTGACGGAGACTAACGGAAACAGAATAGATAGCTTCGTGCAACGTCTTGTTGCAACCGCAAAACTAAGCCCGCCGTCTAGTCCGTGCAAGGATTCCGCCGTCAACTCTCTCGCTAACGGCCGCTAG 1140 0.5728 MELSKLTLEIFSKLEHKWLSHCKPNNKTRILSIDGGGTTAIVAGQALIHLEDQIRLRTSDPQAQLADFFDIVAGTGIGAILAAMITSADAFGRPMYTAREAVRLVSERNSELYKFKSGGVFRRRRKFSSSSMDNVLKQVFQRKEDGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFDFELWKVCRATSATPSHFKPFNLASVDGKTLCSAVDGGLVMNNPTAAAVTHVLHNKHDFPSVNGVEDLLVLSLGNGSSNTKACENSTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLGSKAVRKEEVLKERGLESLPFGGKRLLTETNGNRIDSFVQRLVATAKLSPPSSPCKDSAVNSLANGR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01628 379 Gene3D Cytosolic phospholipase A2 catalytic domain 16 362 - -
Vimu3g01628 379 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Vimu3g01628 379 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Vimu3g01628 379 PANTHER PATATIN-LIKE PROTEIN 6 1 369 - -
Vimu3g01628 379 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Vimu3g01628 379 SUPERFAMILY FabD/lysophospholipase-like 26 310 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01628 Vimu-Chr3 30335237 30336521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01628 1 379 Acyl Lipid Metabolism Gene Families AT3G63200 70.649 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01628 - - gmx:100795441 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01628 3 30335237 30336521 Vimu3g01628 3 30335237 30336521 ECH
Vimu6g02819 6 24864678 24866324 Vimu3g01628 3 30335237 30336521 PCT