Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02795 ATGGCACCCAGAAGGATTGAGATGCTGCTAAGGCTGTGCCTTGTGATGGCTCTTTGGGGTGGCACATTGGCTCAATCTCAATCAAGTTGCACCAATGTCTTCATAAGTCTTGCTCCCTGTCTTGACTATGTAACAGGAAATGCCTCAAACCCTTCCTCTTCTTGCTGCTCTCAACTTGCCTATGTGGTGAGCTCACAACCACTGTGCCTGTGCGAGGTTGTTAGCGGTGCTGCTTCAACAATTGCTGCAAGTTTCAACATCAATCAGACTCGGGCTTTGGCTCTCCCAACTTCTTGCAACATTCAGACACCTCCTCTTACCACCTGCACTGGTACCACTTCATCACCATTTTTCAATACCTATATTACATATATCTCAAAACCTCACCTTATTATTATCTCATCATTTCAGGCTCAGCCTCTTCCTCACCAGCTTTTTCCGTTTCAAACTTTCCCAACTCCCCTTCAGGTTCCATACACACACATTCCCACACTTCATTTTTCAACACCAGATATGAATGCAATACAGAATACAGTCTCTTTTTCTGTTTCTCTCAGTTTCGTTTTTTCTTCTTTTATTACTTCTACAGTGGATTTCACAGAGTACCTTTTTTGCACAGGGATTGGATCCAACACTGTTTCATCACCGACCGGAAGTAGTACATTTGTCGGTGGTTCATCTCACGCAAATTCAAGTTCCACTTCTAAATTATCATGTTCTTGGTTTCTCATGTTTGTCCTTGCAACCACTTTGACTTTCACCTTCAAGAGTACCACATCGCTCAACGTTTTTTAA 795 0.4289 MAPRRIEMLLRLCLVMALWGGTLAQSQSSCTNVFISLAPCLDYVTGNASNPSSSCCSQLAYVVSSQPLCLCEVVSGAASTIAASFNINQTRALALPTSCNIQTPPLTTCTGTTSSPFFNTYITYISKPHLIIISSFQAQPLPHQLFPFQTFPTPLQVPYTHIPTLHFSTPDMNAIQNTVSFSVSLSFVFSSFITSTVDFTEYLFCTGIGSNTVSSPTGSSTFVGGSSHANSSSTSKLSCSWFLMFVLATTLTFTFKSTTSLNVF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02795 264 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 15 152 IPR043325 -
Vimu6g02795 264 Pfam Probable lipid transfer 24 109 IPR016140 -
Vimu6g02795 264 CDD AAI_LTSS 37 101 - -
Vimu6g02795 264 Gene3D - 27 107 IPR036312 -
Vimu6g02795 264 SMART aai_6 30 109 IPR016140 -
Vimu6g02795 264 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Vimu6g02795 264 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Vimu6g02795 264 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Vimu6g02795 264 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 110 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02795 Vimu-Chr6 24552621 24553415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02795 5 110 Lipid Metabolism Gene Families AT3G22600 48.598 4.48e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02795 - - gmx:100801492 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02795 6 24552621 24553415 Vimu6g02795 6 24552621 24553415 ECH
Vimu3g01609 3 30053543 30053878 Vimu6g02795 6 24552621 24553415 PCT