Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01609 ATGGCTTTTAGAGGGTTTATGTTGTGTGTAGTTACGGTTATGGTGGCAACCATATGTACTAAAAATGCTACTGCTCAATCAGGTTGCAGCAGTACACTGACTAGCTTGAGCCCTTGCCTGAACTACGTAATGGGAAGTTCTTCAACCCCATCAACTCCATGTTGCTCACAGCTCTCAACCATTGTCCAATCTTCACCACAGTGCCTTTGCTCTTTGCTCAATGGTGGTTCCACTTTCGGAATTACCATTAATCAGACTCTTGCTTTGTCTCTCCCTGCTGCTTGTAAAGTTCAAACACCCCCAGTCAGCCAGTGTCAAGGTAACAATATTAAGTAG 336 0.4435 MAFRGFMLCVVTVMVATICTKNATAQSGCSSTLTSLSPCLNYVMGSSSTPSTPCCSQLSTIVQSSPQCLCSLLNGGSTFGITINQTLALSLPAACKVQTPPVSQCQGNNIK 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01609 111 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 9 105 IPR043325 -
Vimu3g01609 111 CDD AAI_LTSS 36 97 - -
Vimu3g01609 111 SMART aai_6 29 105 IPR016140 -
Vimu3g01609 111 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 26 104 - -
Vimu3g01609 111 Pfam Probable lipid transfer 10 105 IPR016140 -
Vimu3g01609 111 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 106 IPR036312 -
Vimu3g01609 111 Gene3D - 25 105 IPR036312 -
Vimu3g01609 111 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Vimu3g01609 111 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Vimu3g01609 111 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01609 Vimu-Chr3 30053543 30053878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01609 8 105 Lipid Metabolism Gene Families AT3G22600 56.566 5.77e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01609 - - gmx:100306151 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01609 3 30053543 30053878 Vimu3g01609 3 30053543 30053878 ECH
Vimu3g01609 3 30053543 30053878 Vimu6g02795 6 24552621 24553415 PCT