Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02792 AGAAAGCTACATGAAGTTGTGAGTTTTGTCCCAACAATGAGAGATGAGAACTCGAAGAAGAGCAAGCTTTTTTGGCCAAAAACATTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAGCTGAGGATTTTCAGGCAGATGATGTTCTCTCCCAAGGTGTTGATGAAGAGTGTAGTAGCAACTACTCTGAGAGGGAGGCATGCACCATCAGGAAAAGCAAATCAGAGAGATCAAGCAGATGGTACTCAGACAGAGTGCGAAGAGGTAAGAATGACCTTGATAAAGCTCAGGTTACAGATGTGTATAACTATAGAATCTTTGTTGCCACTTGGAATGTAGCAGGGAAGTCACCTCCAAGTTATTTGAGTCTTGAAGATTGGCTTCACACCTCTCCACCAGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTTAATGCTGGTAATGTTTTGGGAACAGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATTAGGAGGACCTTGAACAACCTTCCTGGAACAAGTGGAGGATGCCACACACCTTCACCCCTCCCTGATCCTATTGTAGAGCTAGATGCTGATTTTGAGGGATCAGTGAGGCAGAAGGCAACCTCTTTCTTTCAACGAAGATCCTTCCAATCCTTGAGTCGTAGTTTGAGAATGGATAATGATATGTTAATGCAACAAGCTTGCCTTGATCGTCGTTTCAGTGTATGTGATAGAGTGATATTTGGTCACAGAGCGAGTGACTATGACCCCAATTATCGATGGGGTTCCTCAGATGAAGAAAATGGCGCTGGTGACTCTCCAATTACAGCACAGTATTCACCGATGTCATACGGTGGTTGTTTCTCTGCAGAGGATAGTGATAGACAGACAGGCCACTCAAGATACTGCTTGGTTGCTAGCAAGCAAATGGTTGGGGTATTTCTAACTGTTTGGGTGAAAAGTGATATAAGAGATTATGTTCACAACATGAAAGTGTCTTGTGTTGGCCGAGGGTTAATGGGATATCTCGGAAACAAGGTACATTTGACCATCTATTTCAATAGCAGAGTTTATAATGGACTAGGGAAGGAAACAATTTCATTGTCTTGGATTTTCCAGGGATCAATATCAATTAGTATGTCATTGCACCAAACAAGCTTTTGCTTCATTTGTAGTCATTTGACTTCTGGACAAAAGGATGGTGACGAGTTAAGGAGAAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCCAGTCCACGACATGGGTGATGAGAATTCTCCTCAGACAATTCTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAATTACCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATGATTGGAAGACTTTGTTAGAGAATGACCAGGCATGTTACGACTATTTTGTCTCTTTACAACTGTGTATAGAGCAGAGGCAAGGTAGAATCTTTGAAGGATGGAACGAAGGGAAAATATATTTCCCTCCAACATATAAGTATTCAAATAATTCAGACCGATATGCAGGCGATGACAGGCGCTCAAAACAAAAGAGAAGAACTCCAGCATGGGGCCTTCACCAATTATCATATGTTCGTGGGGAGTCAAGATTTTCTGATCATAGGCCAGTTTATAGCATATTCTTGGCAGAAGTTGAGTCTACTAGCTGCAACCAAATAAAGAAAAGCTCCAGTTCCAGGATTGATGTAGAAGAGTTGTTTCCAAATTCACATGGTTATGACTACACTGATTTGCACTACTTTTGA 1794 0.4169 RKLHEVVSFVPTMRDENSKKSKLFWPKTLVKKWFNIKSKAEDFQADDVLSQGVDEECSSNYSEREACTIRKSKSERSSRWYSDRVRRGKNDLDKAQVTDVYNYRIFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRRTLNNLPGTSGGCHTPSPLPDPIVELDADFEGSVRQKATSFFQRRSFQSLSRSLRMDNDMLMQQACLDRRFSVCDRVIFGHRASDYDPNYRWGSSDEENGAGDSPITAQYSPMSYGGCFSAEDSDRQTGHSRYCLVASKQMVGVFLTVWVKSDIRDYVHNMKVSCVGRGLMGYLGNKVHLTIYFNSRVYNGLGKETISLSWIFQGSISISMSLHQTSFCFICSHLTSGQKDGDELRRNSDVMEILRKTRFPPVHDMGDENSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHDWKTLLENDQACYDYFVSLQLCIEQRQGRIFEGWNEGKIYFPPTYKYSNNSDRYAGDDRRSKQKRRTPAWGLHQLSYVRGESRFSDHRPVYSIFLAEVESTSCNQIKKSSSSRIDVEELFPNSHGYDYTDLHYF 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02792 597 SUPERFAMILY DNase I-like 95 565 IPR036691 -
Vimu6g02792 597 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 30 572 IPR045849 GO:0004445
Vimu6g02792 597 SMART i5p_5 237 565 IPR000300 GO:0016791|GO:0046856
Vimu6g02792 597 Gene3D Endonuclease/exonuclease/phosphatase 83 193 IPR036691 -
Vimu6g02792 597 Gene3D Endonuclease/exonuclease/phosphatase 281 582 IPR036691 -
Vimu6g02792 597 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 83 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02792 Vimu-Chr6 24535650 24538641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02792 136 533 Acyl Lipid Metabolism Gene Families AT2G43900 23.653 1.49e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02792 - - gmx:100803074 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02792 6 24535650 24538641 Vimu6g02792 6 24535650 24538641 ECH
Vimu6g02792 6 24535650 24538641 Vimu3g01606 3 30016673 30019344 PCT