Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01606 ATGGAGCAACAACTGTTCGCAGAGGGAGGAATACACTATCAAGAAAAGCAAAACAGGTTCCGTGCCCATGCCATTCTTAAATCCCCCATTAGAATTTCTGAGAACTTTCAGAGAGCAAAGAGAAGGCACTCAGACAGAATGCGGCGAGGCAAGGTTAACTTTGATGCTGCTCAGGATACAGATGTGCATAACTATAGAATCTTTGCTGCTACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTCAATGCTGGTAATGTTTTGGGCACGGAAGATAATGGCCCTGCCAGAAAGTGGCTAGCTCTTATTAGAAAGACCCTAAACAGTCTTCCTGGAACAAGTGGTGAATGCCACACTGCTTCTCCACTTCCAGATCCTATTGTAGAGTTAGATGCTGATTTTGAAGGATCAATGAGGCAGAAGGCAACCTCTTTCTTTCATCGCCGGTCGTTTCAATCCTTCAGTCATAGTATGAGAATGGACAATGACATGTCACTTCCACAAGCATACCTTGATCGCCGCCTCAGCGTCTGTGACAGAATGATGTCTGGTCACAGAGCAAGTGATTACGATACCAACTACAGATGGGCTTCTTCGGACGATGAAAATGGAACTGGTGACTCCCCAGTTACAACACAATATTCACCAATGACATGTAAAGGTTTTTTCTCTGTGGAGGATAGAGATAGACAGACAGGGCACTCAAGATACTGCTTGGTTGCCAGTAAACAAATGGTTGGAATATTTCTAACAGTTTGGGTGAAGAGCGATATAAGAGATGATGTTCACAACATGAAAGTATCTTGTGTTGGAAGAGGATTAATGGGATATCTTGGAAACAAGGGTTCAATATCAATCAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAGGGTGATGAGCTAAGGAGAAATTCTGATGTAATGGAGATTCTGAGAAAGACAAGGTTTCCCCGAGTTCATGGCATGGGCGATGAGAGTTCTCCGCAGACAATTTTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAACTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATAACTGGAAGGATCTGTTAGAGAATGACCAGCTACATATAGAGCGGAGACAAGGTCGAGTTTTTGAAGGATGGAATGAGGGGAAAATATATTTCCCTCCCACATACAAGTATTCAAACAACTCAGATAGATATGCAGGCGATGAAAGGCACTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTATGGTATGGTAGAGGCCTCCGCCAATTATCTTATGTTCGTGGGGAATCAAGATTCTCAGATCATAGGCCAGTTTATAGCATGTTCCTGGCAGAAGTTGAGTCTGTTAGCCGTAGCCGAATAAAAAAATGTTCCAGTTGCTCCAGTTCAAGGATTGAAGTAGAAGAGCTGAATGCTGTAAAATATGTCGATCAACCCGCAATTGAGGACACTGAAGAAGGGAAGTGTATCACACAAGGATCCATTCATGGAATTAGAACCTTAGATTGCCTGTTCTTGGGCTATATTCATTTCAGGATTTTTGGCTGA 1695 0.4271 MEQQLFAEGGIHYQEKQNRFRAHAILKSPIRISENFQRAKRRHSDRMRRGKVNFDAAQDTDVHNYRIFAATWNVAGKSPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTASPLPDPIVELDADFEGSMRQKATSFFHRRSFQSFSHSMRMDNDMSLPQAYLDRRLSVCDRMMSGHRASDYDTNYRWASSDDENGTGDSPVTTQYSPMTCKGFFSVEDRDRQTGHSRYCLVASKQMVGIFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHGMGDESSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHNWKDLLENDQLHIERRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERHSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESVSRSRIKKCSSCSSSRIEVEELNAVKYVDQPAIEDTEEGKCITQGSIHGIRTLDCLFLGYIHFRIFG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01606 564 Gene3D Endonuclease/exonuclease/phosphatase 217 523 IPR036691 -
Vimu3g01606 564 Gene3D Endonuclease/exonuclease/phosphatase 44 185 IPR036691 -
Vimu3g01606 564 SMART i5p_5 199 499 IPR000300 GO:0016791|GO:0046856
Vimu3g01606 564 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 39 511 IPR045849 GO:0004445
Vimu3g01606 564 FunFam Type IV inositol polyphosphate 5-phosphatase 7 233 519 - -
Vimu3g01606 564 SUPERFAMILY DNase I-like 50 507 IPR036691 -
Vimu3g01606 564 Pfam Endonuclease/Exonuclease/phosphatase family 70 484 IPR005135 GO:0003824
Vimu3g01606 564 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 45 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01606 Vimu-Chr3 30016673 30019344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01606 266 501 Acyl Lipid Metabolism Gene Families AT2G43900 29.242 3.39e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01606 - - gmx:100797409 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01606 3 30016673 30019344 Vimu3g01606 3 30016673 30019344 ECH
Vimu6g02792 6 24535650 24538641 Vimu3g01606 3 30016673 30019344 PCT