Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02789 ATGGCGGCTCTGTCCCATGCTGATTCTAGAGGAATGTATTCATGGTGGTGGGACAGTCACATTAGCCCCAAGAACTCGAAATGGCTCCAAGAGAATCTGACTGATATGGATTCCAAGGTGAAGCAAATGATCAAGCTTATTGAAGAAGATGCAGATTCCTTTGCAAGGAGGGCAGAAATGTATTATAAGAAACGGCCAGAGCTCATGAAATTAGTTGAAGAGTTTTATCGTGCATACCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTTATTCGTCAGGCCCATCGTACCATGGCTGAAGCATTTCCTAATCAAGTGCCTCCTGCATCAGCAGATGATTCACCTGCAGTTTCTTACATGGAGATTGAACCACATACACCAGAGACACTCACCTTCTCCCGTTCATTTCTTGACTCAGATGAATTGCAAAAGGATGCTTCAACTCATTTACATGCCATCATAAGAAATGGATCTTATACTGATGAAACTGATTGTGGTATAAGCAGAAAGGGGTTGAAACAGCTCAACGATCTATTTATGTCTGGAGAACCAAAAGGTCATGCAAAGTCTTCAGAAGGGCGTGTTCGAAGGGGGCTGAATTTTCTTGACGTAGAAGAGATTAATGGGCAAGACAATGAAAGCCAAGATAGTAGGATTCAAGTCTTATCTGAGTCTGAACGGATGACGAAAGCTGAGACAGAAATTTTGGCCTTAAAGAAAGCCCTGTCTAACTTAGAAAGTGAAAAGGAGGCTGGCTTGCTTCAGTATGAGCAGAGTTTGGAGAGATTGTCTAATCTGGAATCAGAAATGTCTCGTGCAAGAGAGAATTCTCAAGGACTTAATGAACGAGCAAACATAGCTGAAGCTGAAGTTCAAACTTTGAAGGAAGCCCTCGAAGAATTACAGGCTGAAAGAGAAGTTAGTCTTCTTCAGTACCAGCAATGCTTGGAGAAAATATACAATCTGGAGAATCATATTTCTTCTGCCCAAAAGGATGTAGGAGAACTCAATGAACGAGCTACTAGAGCTGAAACTAAAGCTGAATTCTTAAATCAAGACCTTGCTAGAGTAGAAGCTCAAAAGGAAGCTGCCCTTGCTCAATATAACCAGTCCTTGGAGTTGTTGTCAAAACTAGAGGAGAGAGTCGTACAAGCTGAAGAGAACGCAAGGATAATTAAAGAACAAGCTGATGATGCAAAAAATGAAATTGAGAGCATGAAGTCAGAAATTACTAAACTTACTGCAGAGAAGGAAGATGCAGCTCACTGTTATCAACAATGCTTAGAGATAATTTCCAGTTTGGAGCATAAACTCTCTTGTGCCCAAGAGGAGGTGTATAAGCTAAACTGCAAGATAAATGATGGGGTTGAAAAGTTACATAGTTCTGAACAGAAGTGTTTTCTCTTGGAAACATCTAATCAGACTTTGCAATCTGAATTGCAGTCTTTAGCACAGAAGTTGGGATCTCAGAGTGAAGAACTTAGTGAGAAGCAGAAAGAATTGGGTAAACTCTGGACTTGCATACAAGAGGAGAGATTGCGATTCATCGAGGCTGAAGCTGCTTTCCAAACTCTTCAGAATTTGCATTCTCAATCTCAGGAAGAACTAAGATCTCTTGCCACTGAGCTTCATGGTAAGGCTGAAATTCTGGAGAATATGGAATCCCACAAGCAGGCTTTGGAGGATGAAGCTCACAAGGCTAAAGTGGAAAACAAAACTCTAAATGAGCTTAAATTATCTTCATCTTTGTCTATAGAAAAAATGAAGGATGAGATAATAAATTTGAGGGAGATAATAAAGAAACTTGAACTAGAGGTTGGACTGCAGGTAGATGAAAGAAATGCTCTCCAGCAAGAAATTTACTATCTTAAAGAGGAGCTTAATGATGTTAATAAAAGACATGAATCCATGATGGAGGATGTCAGATCAACTGACTTAGATCCTCAGTGCTTTGTCTCTTCTGTGAAGAACTTGCACGATGAGAACTCGAAGCTGAAGGAAACATGTGAAACCTACAAAGATGAGAAAGCAGCTCTAAAGGAAAAAGTGGAGACCATGGAGAAGCTTTTAGAGAAGAATGCTGTTTTGGAGAGGTCTCTTTCAGATTTGACTGTGGAGCTTGAGAAGGCTAGAGGAAAGGTAAAGGTATTGGAACAAACTTGCGAATCTTTTCTTGGGGAGAAAGCCACTCTTGCAGCCGAGAAAGCCACCTTGTTTTCTCAGTTAATATCCACAGCTAAGCAGCTCGAAAAGCTCTCAGGAAAAAACAACCTTTTAGAAAATTCATTATGTGACGTGAATGCTGAGCTTGAAGGATTAAGGATAAAGTCAAAGATTTTAGAAGACTCTTGTCTGTTGCTAGACCATGAGAAGTCCAGTCTAAACTCTGACAAAGAAACCTTAGTTTCACAATTCAACATCACTCACCAAACTCTGAAAGATCTTGGGAAACAACACAGTGAATTGGAACTGAAGCATTCTGAATTGAAAGCGGAAAGGGAATCTGCACTTTTAAAGTTGGAAGAGTTACTTGTTTCCTTATATGCTGAGAGGGAAGAACATTCCAGAATTGTGCAATCGAATGAATGTCACTTGGCTGAGAAGGAATTACAGATTTTCGTACTCCAAGAAGATGCAGATTACCAGACAAAAGAATATGAAGAGGAAATGGACAGATCTATACATGCTCAAATGGAAATATTCATCTTGCAGAGATGTATCCAGGATTTGGAGCAAAGGAACTTCTCCCTTCTAGTTGAGTGTCAGGGACTCTTGGAGGCTTCCAAACTGTCTGATAGATTGATATCTAAATTGGAGAATGACAACACTCAAAAGCAAGTTGATGTTAATTCATTGTCTGAGAAAATTAAAATACTTAGGATCGGGCTGCTTCAGGTGTTGAAGACTCTTGATGTTAACAGTGAGCCTTGGTGTGAAAATATGATTGAAAAGGATCAGGAGCTTCTGAACCACGTACATGGCAAACTTCAAGAGACACAAAGTTCTTTTGTCACAATTTTCAATGAAAGCCAGCAAGTGGCCATTGAGAATTCAGTTCTTGTTACATTCCTTGGCCAGTTGAAATTAGAGGCTGAAAATCTTTTGACGGAAAGAAATTCCCTAGACAAGGAGTTAAAAACCCAGTCTACACAGTTCTTAACATTGCAGGCAGAGGTACAAAAGATATTGGAGAAGAATCAGGAATTGAAGTTCACAATAAGGAAAGGAGAAGAAAAAATGGAAGTGATGGCCACTGAAATAGATAATTTATGCAAACAGTTGTTAGTTTTGAAAGAGGATCACCAAAACATAAAGGAAGAAAGTTGCAAAACCTTTGCAGAGAAAAACTCCTTGTTGAGAAGATTTATGGACCTGGGTGAAGAGAAAAGTAAGATGGAAGATGAAATCTGCGTTATGATTCATGAGACAATAACACAATCTAATCTCTCGCTGGTCTACCAGAACATTGTCTTTGAAAAACTCCTGGCACTTAAAGAGCTGAGTAATAATCTCGATAGACTTTGTTCTGTAAATACCGACACTGAGGAAAAACTAAAAATATTGATGAAAAAAATAGAAGATGTACAAATGGAAAATTCTGATCTTAAAGAGTCCTTTGCAGCGTCAAGCATTGAACTAAAATTAGTTCAATCCATCAATGATCAGTTAAATTGTCAGATTAAGAATGGAAAGCAGTTGTTGTCTCAAAAGGAAAATGAGATTTCGGAAGCATCAGAGATGTTTAGCACTTTACATGATGAAAAAATAGAATTGCAAAGATTGGTGGAAGTTTTGAAGAGTAAGTATGATGAAGCCAGGGTGATACTTGAAGAACAAGCTAGTCAAATTTTAAAATTATCCTCCGACAAGGATAGACAAAATGATGAGCTTGGATGCCTTGGTGGAGTGAATCAGAAGTTGGAGGCAGAAATGAGGCATCTGCGCCAAGAACTGGGAGAAATTAAAGTGAGGGAAGAGAAGCTAAGTCAAGAACTACTCAAGGGAACAAATGAGATTAAACAATGGGAAACTCATGCTGCAACACTCTATACTAGACTGCAGATTTCTGCCGTCAATGAGACATTATTTGAAGAGAAGGTCCGTGAGTTAGCCTATGTATGTGAAGATCTTGAACGCAGAAGCAACTTTAAAGACATGGAAAGTGAAATGTTGAAAGAAAGAGTTTGCAAGTTGGAAGGTGAAAACGGGAAGCTTCGGGTTCAGTTGGCTGCTTATGTCCCGGCTGCAAGTGCTCTGAATGACTGCATAACATCCTTGGAGATGCAAACACTTGGGCATGCAAAACCGCATGACCATAAAATATCAAAGGTTAAAGGTTTGGCGTATCACAAGTACAATGAAGGTGGTCAACAAACAGGTGAATATCAGAATGCTGCGGCAATAGGTGCGCTTCCCGATTTCCAAGACATGCAGGAAAGAGTCAATGCAATTGAAACGGCTGTTAAACAGATGAATGAAACTTTCAAAACTAAGGATGAAATGAGAGAGATTCAAGTGTTGAAATCTGGATTCAGCTGGCGCCAAGGAAATATCCAAGCGAGTAAGTATGCTACTGAAACGCATGAAGCGAAGGGGCATCGAGCTCGACCTTCTGTTGAATTGAAATCAAAGAGATCAGTGTCAGATGTCCCTGTAGCAGAAATTGAAGTTCTGCCAAAAGACATCATGCTTGATCAAACGTCTGAATGTTCATATGGGATAGGTAGGAGAGGAACTCTTGAGACTGATGATCAGATGCTCGAATTGTGGGAAACTGCTAACAAGGATGGCGTTATCGGGCTGACAGTTGGAAAGGCGCCGAAGACAACCATTGTGCCCACTGGATACCAACAAAAGAGAGCAACCAAGGAACTAAGAAACAAATATCCATCCGTGGAGTCCTTGATTGAGAAGGAGTTGAGTGTGGACAAATTAGAGATCTCAAGAAGATTGACACTGCCACATTCACATGAAGAAGGCAACAGGAGGAAGATTTTAGAAAGACTTGATTCTGATGCTCAAAAGTTGACAAACCTTGAAATTACCGTGCAAGATTTGATGAGCAAGCTAGAAATTACTGAGAGCACAAAGGGAAAAGGCATTGAGTTCGATACGGTGAAAGGGCAGCTTGAAACTACTCAGGAAGTCATCACAAAGTTGTTTGATGCCAACAACAAGTTGAAGAAAAATGTAGAAGAGGGTACTTCATCCTTTGCTGCGAAGTATACAGCAGAATCAAATGAGAGTGGAAGTGTCAGCAGGAGGAGAGTTTCAGAACAGGCTCGGAAAGGGTCTGAAAAGATAGGACGGCTGCAGTTGGAGGTGCAAAGACTGCAATTTTTACTTCTAAAGTTGAATGATGAAAAAGAAGGCAAAGGAAAGGCGATTATAGATGAACGAAATTCAAAAGTCCTTTTGCGAGACTATCTCTATGATGGGACGAGAAGAAACTACCAGAAAAAGAAGAAGAAAGCACCCTTTTGTGCATGCATGCAGCCTCCCACTAAGGGAGATTAA 5523 0.4012 MAALSHADSRGMYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHRTMAEAFPNQVPPASADDSPAVSYMEIEPHTPETLTFSRSFLDSDELQKDASTHLHAIIRNGSYTDETDCGISRKGLKQLNDLFMSGEPKGHAKSSEGRVRRGLNFLDVEEINGQDNESQDSRIQVLSESERMTKAETEILALKKALSNLESEKEAGLLQYEQSLERLSNLESEMSRARENSQGLNERANIAEAEVQTLKEALEELQAEREVSLLQYQQCLEKIYNLENHISSAQKDVGELNERATRAETKAEFLNQDLARVEAQKEAALAQYNQSLELLSKLEERVVQAEENARIIKEQADDAKNEIESMKSEITKLTAEKEDAAHCYQQCLEIISSLEHKLSCAQEEVYKLNCKINDGVEKLHSSEQKCFLLETSNQTLQSELQSLAQKLGSQSEELSEKQKELGKLWTCIQEERLRFIEAEAAFQTLQNLHSQSQEELRSLATELHGKAEILENMESHKQALEDEAHKAKVENKTLNELKLSSSLSIEKMKDEIINLREIIKKLELEVGLQVDERNALQQEIYYLKEELNDVNKRHESMMEDVRSTDLDPQCFVSSVKNLHDENSKLKETCETYKDEKAALKEKVETMEKLLEKNAVLERSLSDLTVELEKARGKVKVLEQTCESFLGEKATLAAEKATLFSQLISTAKQLEKLSGKNNLLENSLCDVNAELEGLRIKSKILEDSCLLLDHEKSSLNSDKETLVSQFNITHQTLKDLGKQHSELELKHSELKAERESALLKLEELLVSLYAEREEHSRIVQSNECHLAEKELQIFVLQEDADYQTKEYEEEMDRSIHAQMEIFILQRCIQDLEQRNFSLLVECQGLLEASKLSDRLISKLENDNTQKQVDVNSLSEKIKILRIGLLQVLKTLDVNSEPWCENMIEKDQELLNHVHGKLQETQSSFVTIFNESQQVAIENSVLVTFLGQLKLEAENLLTERNSLDKELKTQSTQFLTLQAEVQKILEKNQELKFTIRKGEEKMEVMATEIDNLCKQLLVLKEDHQNIKEESCKTFAEKNSLLRRFMDLGEEKSKMEDEICVMIHETITQSNLSLVYQNIVFEKLLALKELSNNLDRLCSVNTDTEEKLKILMKKIEDVQMENSDLKESFAASSIELKLVQSINDQLNCQIKNGKQLLSQKENEISEASEMFSTLHDEKIELQRLVEVLKSKYDEARVILEEQASQILKLSSDKDRQNDELGCLGGVNQKLEAEMRHLRQELGEIKVREEKLSQELLKGTNEIKQWETHAATLYTRLQISAVNETLFEEKVRELAYVCEDLERRSNFKDMESEMLKERVCKLEGENGKLRVQLAAYVPAASALNDCITSLEMQTLGHAKPHDHKISKVKGLAYHKYNEGGQQTGEYQNAAAIGALPDFQDMQERVNAIETAVKQMNETFKTKDEMREIQVLKSGFSWRQGNIQASKYATETHEAKGHRARPSVELKSKRSVSDVPVAEIEVLPKDIMLDQTSECSYGIGRRGTLETDDQMLELWETANKDGVIGLTVGKAPKTTIVPTGYQQKRATKELRNKYPSVESLIEKELSVDKLEISRRLTLPHSHEEGNRRKILERLDSDAQKLTNLEITVQDLMSKLEITESTKGKGIEFDTVKGQLETTQEVITKLFDANNKLKKNVEEGTSSFAAKYTAESNESGSVSRRRVSEQARKGSEKIGRLQLEVQRLQFLLLKLNDEKEGKGKAIIDERNSKVLLRDYLYDGTRRNYQKKKKKAPFCACMQPPTKGD 1840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02789 1840 Coils Coil 1222 1256 - -
Vimu6g02789 1840 Coils Coil 1770 1790 - -
Vimu6g02789 1840 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Vimu6g02789 1840 Coils Coil 587 646 - -
Vimu6g02789 1840 Coils Coil 657 722 - -
Vimu6g02789 1840 Coils Coil 1678 1698 - -
Vimu6g02789 1840 Coils Coil 230 250 - -
Vimu6g02789 1840 Gene3D - 228 392 - -
Vimu6g02789 1840 MobiDBLite consensus disorder prediction 1746 1765 - -
Vimu6g02789 1840 Coils Coil 1026 1053 - -
Vimu6g02789 1840 Coils Coil 258 418 - -
Vimu6g02789 1840 Coils Coil 1476 1496 - -
Vimu6g02789 1840 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Vimu6g02789 1840 Coils Coil 1278 1298 - -
Vimu6g02789 1840 Coils Coil 1089 1109 - -
Vimu6g02789 1840 PANTHER PROTEIN NETWORKED 4A 284 386 - -
Vimu6g02789 1840 Coils Coil 814 841 - -
Vimu6g02789 1840 Coils Coil 1117 1137 - -
Vimu6g02789 1840 Coils Coil 545 579 - -
Vimu6g02789 1840 Coils Coil 1306 1333 - -
Vimu6g02789 1840 Coils Coil 475 502 - -
Vimu6g02789 1840 Coils Coil 937 957 - -
Vimu6g02789 1840 SUPERFAMILY Tropomyosin 228 447 - -
Vimu6g02789 1840 Coils Coil 1166 1207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02789 Vimu-Chr6 24495447 24505129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02789 - - gmx:100810726 2893.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02789 6 24495447 24505129 Vimu6g02789 6 24495447 24505129 ECH
Vimu6g02789 6 24495447 24505129 Vimu3g01601 3 29911351 29918383 PCT