Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01601 ATGGTAGTTTGTGCTTATTCCGGCATGTCGGGAGGGAATACACAGGAAGAAACTGTGTGGACTTCTTTGACTTTGCAGTTGCTTCTTCGAAACTTTGAAGGGTTAAGTTCCTGTAACATCATAAGACAAAGTTCTGCTGTCCTTTTTCTGGAGCAATGGCGACTTTGTCACATGCAAACTCTAGGAGAATGTATTCATGGTGATATGGATGCCAAGGTGAAGCAAATGATTAAGCTTATTGAAGAAGATGCAGATTCTTTTGCAAGGAGAGCAGAAATGTATTATAAAAAACGCCCAGAGCTTATGAAAATGGTTGAAGAGTTTTACAGGGCATATCGAGCGTTGGCTGAGAGATATGATCATGCAACTGGAGTTATCCGCCATGCCCATAAGACCATGTCTGAGGCATTTCCTAATCAAGTTCCTATGATGCTGACAGATGATTTACCTACAGGTTCTCCTGAGGCAGAGCCACACACTCCAGAAATGCGCCACTCTTCACGTTCCTTTCTTGATCCAGATGAACCACAAAAGGAGGCTTCTGCTCACTTCCATGTTATAAAAAAGAATGGTGGTTATTCTGGCGAACCTGATTCTTCTTTGAACAAAACAGGTTTGAAACAGCTCAATGATCTCTACATCCCTGGAGAACCGGAAAATCTTACACAGTTTGCAGAAAGGAATGCTAGAAGGGGGCTCAATTTTTTCGAGACACAGGAGAGTAGTGAGCTAAACAATGGAAGCAACAATACTAGGTCTCACGTCTCGTCTGAGTCTGAACGTGTGACAAAAGCCGAGACAGAAATTTTGGCCTTGAAGAAAGCCATTGCAAAATTAGAGGATGAAAAGGAAGCTGGCTTGCTTCAGTATCAACAGTGTTTAGAGAAGCTGTCTAATCTCCAGTTAGAATTGTCTAGCGCACAAGAGAATTCTCAAAAACTCGATCAGCGAGCAAGTAAAGCTGAAGCTGAAATTCAATCCTTGAAGGAAACCCAAATTAAATTACAGGCTGAAAGTGAAGATAGTCTTCTTCAGTATCAGGAGTGCTTGGAGAAAATAACAAAGCTAGAGGAAAATATTTCTTCTGCGCAGACAGAAGCTGGAGAACTTAATGAAAGAGCTAACAGAGCAGAAAATGAAGCTGAATCCCTGCAGCAGGACCTTGCTAGAGTAGAAGCTGAAAAGGAAGCTATCATTGTTCAATATAAACATTGCTCGGAGACACTATCAAAATTGGAGGAGAGATTAGAAGAAGCGGAGGAAAATGCAAGAAGGACTAAGGAGCATGCCACTGTAGCTGAAAATGAAATTGGGGCCTTGAAACTACAAGTTACTAAACTTAATGAAGAAAAGGAAGAAGCTGCTCTCCGTTATCAGCAATGCTTGGAGATGATTTCGGGTCTGGAATATAAACTCTCTTGTGCTGAAGAGGAGGTGCGTAGGCTAAATTCCAAGATAGATGATGAGGTGGAAAAATTACAGAGTTCTGAAAAGAAGTGTCTTCTCCTGGAGACATCAAATCACAATCTGCAGTCTGAGTTACAATCTTTGGCGCAACAAATGGGGTCTCAAAGTGAAGAACTTAATGAGAAGCAGAAAGAATTGAGTAGACTATGGGGTTGTATACAGGAGGAGAGATTGCGCTTCGTTGAGGCTGAAACCGCTTTCCAAACTCTTCAGCAGTTACATTCTCAATCTCAGGAAGAGCTCAGATCTCTTGCTGCTGAACTTCACAGTAAAGTGGATATACTGGGGAACGTGGAATCACGTAAGCAGGCTTTAGAGGATGAAATACACAGGGTCAGTGAGGAAAACAAAGTTCTAAATGAGGTCAAAATTTCTTCATCTTTGTCAATAAAAAATCTGCAGGATGAGATTCTGAATTTGAGGGAGACAATAGAGAAACTCGAACAGGAGGTGGAGCTGCGAATTGATCAAAGAAACGCTCTTCAGCAAGAAATTTACTGCCTTAAAGAGGAGCTTAATGATTTGAATAAAAAACATGAAGCCATGATGGAGGAAGTCAGGTCAACTGATTTAGATCCACAGTGCTTTGGACCATCTGTGAAAAAATTGCAGGATGAAAACTTAAAGCTGAAGGAAACATGTGAGGCTGACAAAGGAGAGAAAGAAGCTCTTTTGGTAAAATTAGAAACCATGGAGAAAATTCTGGAGAAAAATACTGTCTTAGAAAATTCCCTTTCAGACTTGAATGCTGAACTGGAAAGTGTCAGAGGAAAGGTAAATGTGTTGGAAGAAACATGTCAGTCTCTACTAGTTGAGAAATCCAATCTTGCTGCTGAGAAGGCCACCTTGTTTTCTCAGTTACAATCCACAACTGAAAAGCTGGAGAGGCTCTCAGAAAAGAGCAACCTATTGGAAAATTCATTATTTGATGTGAATGCTGAACTTGAAGGGTTAAGGATGAAGTCCAGGGTGTTAGAAGATACATGCCAGTCACTTGACCATGAGAAGTCCAGTATCTTTCAAGAGAAAGAAACCTTAGTTTCACAGATGAACATCACTCATCAAACACTGAAAGATCTTGAGAAACTGCACAGTGAATTGGAGTCAAAGCATTTGGAACTAAAAGGAGAAAGAGAGTCTGCACTTCAAAAGGTAGAAGAACTTCTAGTTTCCCTATATTCTGAGAGGGAAGAGCATTCCAGAGTTTTGAAATTGAATGAAGATGAATTGGCTGAGAAGGAATTACAAATTCATATTCTACAAGAAGATACCAATTGCAAGAAAAAAGATTATGAGGAAGAACTGGACAGAACTATACATGCTCAAATTGAAATTTTCATCTTGCAGCAATGTATTGACGATCTGGAAAAAAAGAACTTCTCCATTCTGGTTGAGTGTCAGAGACTCTTGGAGGCTTCCAAAATGTCAGACAGAATGATATCTAAATTGGAGACTGAGAATGCTCAAAAGCAGGTTGATGTGAATTCTCTGTCTGAGAAAATTAAAATACTAAGGGTTGGGTTGATTCAGGTGTTGAAGACTCTTGACCATAACAGTGGGCATTTCTGTGAAGATATGCTTGAAGAAGACCAAATGCTTTTGAACCAGATATATGAAAAACTTCAGGACAGGCAGAAATCTTTTGACATAATTTGCAATGAAGGCCAAAAAATGGCCATTGAGAATTCAATTCTGATTACATTCCTTGAGCAGTTGAAACTAAAGGTAGAAAATCTCGTGGCACAAAGAGATGACCTTGATGAACAGTTCAATATCCAGTCTCAGCAGTTCTTGGCATTGCAAATAGAGGTTCAAGAGATACTGGAGAAGAACCAAGAGTTGAAGTTAACAATAAGCAAAGGAGAAGAGAGAATGGAAGTAATGACAGCTGAAATAGGCAACCTAGAGAAGAAGCTGTCAGACATGGAAAAAAATCACAACAATTTACAGGAGGATAGTCACAAAATATTGGAAGAGAAGAAGTCCTTGATGAGAAGTTTTCTAGATCTGGGTGAAGTGAAAAGTAACTTGGAAGAAGAAATATGTTTCATGATCCATGAGACAATAGCTCAGTCTAATATTTCCCTGATTTATGAGAATATTATCTTTGAAAAACTCCTGGAACTTAAAGAGCTAGGTGAGGATCTTGATAAACATTGTTCAGCAAATAATGACCTCAAGGAGAGATTAAAAGTTATGGAGGAAAAGTTAGAGAATGCAGAAATGGAAAATTCACATCTTAAAGAGTCATTTATAAAGTCAAATGTTGAACTGCATTTAGTTCAATCTATCAATGATGAATTAAGTTGTCAGATTAGGGATGAAAGGGAAATGTTGAATCATAAGGAAAATGAGCTTTTGAAAGCAGCTGAGATGTTTCATGTTTTACATGCTGAGAAAACAGAATTGCAAAGAATGGTGGAAGATCTGAAGATTAAGTATGATGAAGCAAGGGTGATGCTGGAAGAACAGGCTAATCAAATTTTGAAATTGTCCTCAGACAAGGACCGTCAAGATGAAGAGGTAATTTGCCTGTGCAAAGTGAACCAGAAGTTGGAGTCTGAAATAGGGCATCTACGTCAAGAGCTTGGAGAAACTAAACTGAGGGAAAATAAGCTAAGTTACGAAGTACTTAAGGGAAGAAATGAGATTGAACAATGGGAAACTCAGGCTTCAACACTCTTTGCTGAGCTGCAGATTTCTGCTGTGAATGGAACATTATTTGAAGGAAAGGTCTCTGAGCTAGCTGATGCTTGTGAGAATCTTGAACACAGAAACTACTCCAAAGACATGGAAAGCGAGCATCTGAAAGAAAGAGTTAGCAAGCTGGAAATTGAAAATGGAAGACTATCTGGTCAATTAGCTGCTTATGTCCCTGCTGTCAGTGCTTTGAATGATAGTATAACAGCTCTGGAGATGCAGACTCTTTCACATGCAAAACCTGATGACTGTGAAGAAACAAAGGTTAAAGTATTGGTGGGTAATGAATTCACTGAAAATGGTCAACAAACAGACGAAGATAAGACTGTTATGGCACCAGATGCACTCCCTGGCTTCAATGACATGCAGAGAAGGATCAATGCTATTGCAGTAGTAGTAAAGCAGTTAAATGAAAGTTTCAAACTCAAGAATGAAACTAGAGAGATTCAAGAGTTAAAATCTGGAATTACCCAATCAAGTAAGCATGTTACTCAAGACCAAGGAAAGTCCCCGGTTACAGAGATCGAAGTTTTGCCTAAGGACATCATGCTAGACCAAATATCTGAATGTTCATCGTATGGGATAAGTAGGAGGAGAGAAATTCTTGAAGCTGATGATCAGATGCTTGAGTTGTGGGAAACAGAAGATAAGGATGGAAGTATCGGAAAGCAAGTCGAAAAGACACAAAGGATGGCTTCTGAAGCTGCAGGCAATCAACAAAGAGGAACAACCAAGGAACCCAAAAATAAATATCCTTCAAAAGAATCCTTGGTGGAAAAAGAATTGAGTGTGGACAAGTTAGAGATCTCAAAAAGATTGACACTGCCACGGGATGAAGGGAACCAAACGAAGATTTTAGAGAGACTCGATTCTGATGCACAGAAGTTGACAAACCTTCAAATCACTGTACAAGATTTGATGAAGAAGGTAGAGGTTAATGAGAAGAACACAAAAGGAAAAGGTGTTGAGTTTGATGAAGTAAAAGGGCAACTTGAAGCATCCCAGGAGACCATCAGAAAGTTGTTTGACACCAACAAGAAGTTGATGAAGAATGTGGAAGAGGGTGCCTTGTCATCTGTCGGGAAGAGTGCAGGAGAGTCAGATGAAAATGGAAATGTCAGCAGGAGAGTCTCAGACCAGGCAAGGAGAGAATCAGAAAAGATAGGACAACTGCATTTGGAGGTGCAGAGGTTGCAGTTTCTACTGCTGAAACTTGGTGATGGAAAAGAAAGCAAAGAGAAAACGAAAACCAGTGATCGAAATCCAAGAGTGCTTTTGCGAGATTATCTGTATGGTGGGACGAGAGGCAACATCCATAAGAAGAAAAAGCTACCATTTTGTTCATGTATGCGACCTCCCACCAAGGGAGATTGA 5541 0.3974 MVVCAYSGMSGGNTQEETVWTSLTLQLLLRNFEGLSSCNIIRQSSAVLFLEQWRLCHMQTLGECIHGDMDAKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHKTMSEAFPNQVPMMLTDDLPTGSPEAEPHTPEMRHSSRSFLDPDEPQKEASAHFHVIKKNGGYSGEPDSSLNKTGLKQLNDLYIPGEPENLTQFAERNARRGLNFFETQESSELNNGSNNTRSHVSSESERVTKAETEILALKKAIAKLEDEKEAGLLQYQQCLEKLSNLQLELSSAQENSQKLDQRASKAEAEIQSLKETQIKLQAESEDSLLQYQECLEKITKLEENISSAQTEAGELNERANRAENEAESLQQDLARVEAEKEAIIVQYKHCSETLSKLEERLEEAEENARRTKEHATVAENEIGALKLQVTKLNEEKEEAALRYQQCLEMISGLEYKLSCAEEEVRRLNSKIDDEVEKLQSSEKKCLLLETSNHNLQSELQSLAQQMGSQSEELNEKQKELSRLWGCIQEERLRFVEAETAFQTLQQLHSQSQEELRSLAAELHSKVDILGNVESRKQALEDEIHRVSEENKVLNEVKISSSLSIKNLQDEILNLRETIEKLEQEVELRIDQRNALQQEIYCLKEELNDLNKKHEAMMEEVRSTDLDPQCFGPSVKKLQDENLKLKETCEADKGEKEALLVKLETMEKILEKNTVLENSLSDLNAELESVRGKVNVLEETCQSLLVEKSNLAAEKATLFSQLQSTTEKLERLSEKSNLLENSLFDVNAELEGLRMKSRVLEDTCQSLDHEKSSIFQEKETLVSQMNITHQTLKDLEKLHSELESKHLELKGERESALQKVEELLVSLYSEREEHSRVLKLNEDELAEKELQIHILQEDTNCKKKDYEEELDRTIHAQIEIFILQQCIDDLEKKNFSILVECQRLLEASKMSDRMISKLETENAQKQVDVNSLSEKIKILRVGLIQVLKTLDHNSGHFCEDMLEEDQMLLNQIYEKLQDRQKSFDIICNEGQKMAIENSILITFLEQLKLKVENLVAQRDDLDEQFNIQSQQFLALQIEVQEILEKNQELKLTISKGEERMEVMTAEIGNLEKKLSDMEKNHNNLQEDSHKILEEKKSLMRSFLDLGEVKSNLEEEICFMIHETIAQSNISLIYENIIFEKLLELKELGEDLDKHCSANNDLKERLKVMEEKLENAEMENSHLKESFIKSNVELHLVQSINDELSCQIRDEREMLNHKENELLKAAEMFHVLHAEKTELQRMVEDLKIKYDEARVMLEEQANQILKLSSDKDRQDEEVICLCKVNQKLESEIGHLRQELGETKLRENKLSYEVLKGRNEIEQWETQASTLFAELQISAVNGTLFEGKVSELADACENLEHRNYSKDMESEHLKERVSKLEIENGRLSGQLAAYVPAVSALNDSITALEMQTLSHAKPDDCEETKVKVLVGNEFTENGQQTDEDKTVMAPDALPGFNDMQRRINAIAVVVKQLNESFKLKNETREIQELKSGITQSSKHVTQDQGKSPVTEIEVLPKDIMLDQISECSSYGISRRREILEADDQMLELWETEDKDGSIGKQVEKTQRMASEAAGNQQRGTTKEPKNKYPSKESLVEKELSVDKLEISKRLTLPRDEGNQTKILERLDSDAQKLTNLQITVQDLMKKVEVNEKNTKGKGVEFDEVKGQLEASQETIRKLFDTNKKLMKNVEEGALSSVGKSAGESDENGNVSRRVSDQARRESEKIGQLHLEVQRLQFLLLKLGDGKESKEKTKTSDRNPRVLLRDYLYGGTRGNIHKKKKLPFCSCMRPPTKGD 1846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 1746 1772 - -
Vimu3g01601 1846 Coils Coil 556 576 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 239 256 - -
Vimu3g01601 1846 PANTHER PROTEIN NETWORKED 4A 316 418 - -
Vimu3g01601 1846 Coils Coil 584 611 - -
Vimu3g01601 1846 Coils Coil 1254 1274 - -
Vimu3g01601 1846 Coils Coil 839 873 - -
Vimu3g01601 1846 Coils Coil 689 709 - -
Vimu3g01601 1846 Coils Coil 346 499 - -
Vimu3g01601 1846 SUPERFAMILY Tropomyosin 443 678 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 149 180 - -
Vimu3g01601 1846 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 43 126 IPR011684 GO:0003779
Vimu3g01601 1846 Coils Coil 1720 1740 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 1617 1644 - -
Vimu3g01601 1846 Coils Coil 1338 1358 - -
Vimu3g01601 1846 Coils Coil 1289 1330 - -
Vimu3g01601 1846 Gene3D - 719 895 - -
Vimu3g01601 1846 Gene3D - 341 501 - -
Vimu3g01601 1846 Coils Coil 1685 1705 - -
Vimu3g01601 1846 Coils Coil 885 912 - -
Vimu3g01601 1846 Coils Coil 1198 1239 - -
Vimu3g01601 1846 Coils Coil 969 989 - -
Vimu3g01601 1846 Coils Coil 262 282 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 239 263 - -
Vimu3g01601 1846 Coils Coil 1058 1078 - -
Vimu3g01601 1846 SUPERFAMILY Tropomyosin 250 452 - -
Vimu3g01601 1846 Coils Coil 619 678 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 1620 1635 - -
Vimu3g01601 1846 MobiDBLite consensus disorder prediction 158 180 - -
Vimu3g01601 1846 Coils Coil 720 803 - -
Vimu3g01601 1846 Pfam KIP1-like protein 67 120 IPR011684 GO:0003779
Vimu3g01601 1846 Coils Coil 290 338 - -
Vimu3g01601 1846 Coils Coil 1093 1148 - -
Vimu3g01601 1846 Coils Coil 507 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01601 Vimu-Chr3 29911351 29918383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01601 - - lang:109335385 2258.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01601 3 29911351 29918383 Vimu3g01601 3 29911351 29918383 ECH
Vimu6g02789 6 24495447 24505129 Vimu3g01601 3 29911351 29918383 PCT