Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02784 ATGGAGCCAAAGTGCACCATAAACTGTCGCCGCTCGGAGTTCGCTCCGACCCCTCTGCCGGAGAGTCCTCGAGTGCCCATGGAGTTTCTGTCACGCTCATGGAGTGCCTCTGCTCTTGAGGTTTCCAAAGCTCTTTCACATCACCACTCCTCTCTTTCCTCTTCTTGCATGCCTAATTCAAACAACACTTCCATTCCGGAGGAAACTGTTCCCAACAACACCAACACCAACGCCTTTCTCTCTGAAGATTTCTCCACCATGTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCTCAGCTTGTCCTTGAACGCATTATGTCACAATCCACAAGAGAGGAAGTGTCTCCGTTAACGTCGGGTAGGTTATCTCACAGCAGCGAGCCTTTGAATGGCGGTGGTTCCTTAACCGGAACAGATAGCCCTCCGATTTCACCTTCGGATGAGTTTGATGACGTTGTTAAGTTCTTTCGGGCAAATAATTCAATTCACCCTTTGTTCAATGGTGGACGAGCCAGTGCAACTATTGGCAACGGCACAGCATGCTCAGGACCAAAAACTGTTGGAAGATGGTTAAAGGACCGAAGAGAGAAGAAGAAAGAAGAAAACAGAACCCATACTGCTCAGCTGCATGCCACTATTTCAGTGGCTGCAGTGGCTGCTGCCGTTGCAGCTATTGCGGCTGCTACAGCAGGCTCGTCTGCTCCCAGCAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCTACATTAGTTGCTGCACAGTGTGTAGAGGCTGCAGAAGCTATGGGGGCCGAGCGTGACCACCTTGCTTCTGTCATCAGCTCTGCTGTGAATGTCCGTTCCCATGATGATATTACTACTCTTACAGCTGCAGCTGCCACAGCTCTACGAGGAGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATAGCCACAGTTACGCCACTGGAGCGAGGCATAGGGGGGATTGGACTATGTGGTAAAAGTATTAACAGCAATACTAGCAACACCAGCACCAGTGATAGCGGGGAAGTTTTCAATGGAGAAAATTTTCTAGGTGCCTGCAGCCAAGAGCTTATTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTCTATATACATCGAACCGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTGGCAGGAACAATTACCAAAAAGAAAAAGAATGTTGTGTTAGATATCTGCACGGATTTACCAGCATGGCCAGGGAGACATCTGTTTGATGATGGTGAAAAGCGACGCTACTTTGGATTGAAGACCGACCAAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAACGAGAATATGACATCTGGACACAAGGGGTTTCGAGACTACTCTCCATTGTAGCACAGAGGCAAAACAGATATGGGAACTAA 1467 0.4819 MEPKCTINCRRSEFAPTPLPESPRVPMEFLSRSWSASALEVSKALSHHHSSLSSSCMPNSNNTSIPEETVPNNTNTNAFLSEDFSTMSKNQFSFASSATSQLVLERIMSQSTREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRASATIGNGTACSGPKTVGRWLKDRREKKKEENRTHTAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVISSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEVFNGENFLGACSQELIAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICTDLPAWPGRHLFDDGEKRRYFGLKTDQRGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNRYGN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02784 488 MobiDBLite consensus disorder prediction 112 149 - -
Vimu6g02784 488 PANTHER EXPRESSED PROTEIN 16 480 IPR040269 -
Vimu6g02784 488 Pfam Plant pleckstrin homology-like region 374 479 IPR013666 -
Vimu6g02784 488 Pfam Auxin canalisation 20 327 IPR008546 -
Vimu6g02784 488 MobiDBLite consensus disorder prediction 112 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02784 Vimu-Chr6 24444310 24447659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02784 - - gmx:100793202 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02784 6 24444310 24447659 Vimu6g02784 6 24444310 24447659 ECH
Vimu6g02784 6 24444310 24447659 Vimu3g01594 3 29807918 29811597 PCT