Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01594 ATGGAACCCAAGTTCACAGTGAATTGTGACCGAAATGAGTTGCTCAAAACCAGAACTAGTACTCATTTGCCAGAGAGCCCAAGAGTACCAATGGAGTTTCTGTCAAGATCATGGAGTGCATCTGCTCTTGATGTCTCCAAAGCCCTTGCACCTCCACCACCACCTTCTTCTTACATACCTTCCAAGCCTCCTATTATACCCTCTTCTATCACTAACTCCATTTCCGAAGAAACTTGTTCTGCTAAGTTAGAGGAGTTCTCAGCAACCATGTGCGCCAACCAGTTCTCTTTTGCTTCCTCCGCCACTTCACAGCTCGTCCTTGACCGCATTATGTCACAGTCAACTAGAGAGGAAGTGTCTCCATTAACGTCAGGGAGACTGTCTCACAGCAGTGAACCTTTGAACGGTGGTGCTTCTTTAACTGGAACGGACAGTCCACCAATCTCTCCTTCTGACGAGTTTGACGATGTTGTCAAGTTTCCATGGTTGCATGGAAGAAATATCTATGTTCATGGCTATTCAACAATATGGTGGCGTTTGGTGCTTGCTGCTCATGGTGTTGAACTGTTGAAGTGGGTAATGACGCACGCTGCTGTTGTTACTGATACGTTTTTTCGGGCAAACAACTCCATTCATCCCTTATTCAATGGTGGACGAGGCATGAGTGGTGCTACAGGCAATGCCACTCCTAGCTCCGGACCTAAAACAGTAGGAAGATGGTTGAAAGACAGAAGAGAAAAGAAGAAAGAAGAAAACAGAACCCATAATGCTCAACTTCATGCTTCAGTTTCTGTTGCTGCCGTAGCAGCTGCAGTTGCAGCTGTCACTGCCGCAACGGCAGCCACATCTGCAGCTACCAAGGATGAGAAGATGGCCATGTCCGTTGCTTCTGCGGCCACTTTAGTTGCTGCTCAGTGTGTAGAGGCCGCTGAAGCAATGGGAGCTGAGAGAGATCACCTTGCTTCTGTGGTTAGTTCTGCCGTCAATGTCCGCTCTCATGATGATATTTCAACACTTACAGCTGCAGCTGCCACAGCTCTACGTGGGGCAGCAACCCTGAAAGCAAGAGCATTGAAGGAGGTGTGGAATATTAATGCAGTGACTCCATTAGAGAGAGGAGCAGGTATTGGAATATGTGGTAAAAGCAACAACAGTAATTCTAGCACCAGTGACAGTGGGGAGATTATGAATGGTGACAATTTTTTGGGTGCATGCAACCAAGAGCTCCTTGCTAGGGGCACTGCATTACTCAAACGGACACGCAAAGGTGATCTTCACTGGAAAATAGTTTCAGTTTATATACATCGAACAGGCGAGGTAATGCTGAAAATGAAGAGCAGACACGTTGCAGGAACTATCACCAAAAAGAAAAAGAATGTTGTTTTGGATGTGTGCACAAATTTAGCAGCATGGCCAGGAAGGCATCTGGTTGATGAGGGTGAAGAAAGAAGGTATTTTGGATTGAAGACAGAAGCAAGGGGAGTTGTGGAGTTTGAATGCAGAAATCAAAGAGAATATGATATTTGGACTCAAGGGGTTTCTAGACTTCTTTCCATAGTTGCACGCAGACAAAACCTAAATGGGGTTTGA 1590 0.4591 MEPKFTVNCDRNELLKTRTSTHLPESPRVPMEFLSRSWSASALDVSKALAPPPPPSSYIPSKPPIIPSSITNSISEETCSAKLEEFSATMCANQFSFASSATSQLVLDRIMSQSTREEVSPLTSGRLSHSSEPLNGGASLTGTDSPPISPSDEFDDVVKFPWLHGRNIYVHGYSTIWWRLVLAAHGVELLKWVMTHAAVVTDTFFRANNSIHPLFNGGRGMSGATGNATPSSGPKTVGRWLKDRREKKKEENRTHNAQLHASVSVAAVAAAVAAVTAATAATSAATKDEKMAMSVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDISTLTAAAATALRGAATLKARALKEVWNINAVTPLERGAGIGICGKSNNSNSSTSDSGEIMNGDNFLGACNQELLARGTALLKRTRKGDLHWKIVSVYIHRTGEVMLKMKSRHVAGTITKKKKNVVLDVCTNLAAWPGRHLVDEGEERRYFGLKTEARGVVEFECRNQREYDIWTQGVSRLLSIVARRQNLNGV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01594 529 PANTHER EXPRESSED PROTEIN 18 521 IPR040269 -
Vimu3g01594 529 MobiDBLite consensus disorder prediction 116 150 - -
Vimu3g01594 529 Pfam Auxin canalisation 24 372 IPR008546 -
Vimu3g01594 529 Pfam Plant pleckstrin homology-like region 416 520 IPR013666 -
Vimu3g01594 529 MobiDBLite consensus disorder prediction 116 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01594 Vimu-Chr3 29807918 29811597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01594 - - gmx:100782024 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01594 3 29807918 29811597 Vimu3g01594 3 29807918 29811597 ECH
Vimu6g02784 6 24444310 24447659 Vimu3g01594 3 29807918 29811597 PCT