Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02781 GGTGGTGTTGTGGAGATCCGGGAGTTGTTTCGTCTCTTATGCCCCATGAGGAGTTTCTTCCCTGCAGAATCCTGTAAAGAGACGCATCCAAATGCTTTGAATCCTCAGTCTTGGCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCGTACCCTTCCTCTGCCTCAATAGAATCTCTGGTCAAGGTCCCTCAGCCAGCTGTACTGCCTTTCTATAAGCCTGCTGATTATGTGGAGGTTTTAGCGCAAATCCATGAAGAGCTTGAGTCTTGTCCTCCACAAGAGCGGTCGAATCTGTTTTTGTTACAATACCAAGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTTCAGGGAGCCTGGCAGAAAGCCAATACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCAAGAGGAAGAACTAATAGCCGACTTGCTTGCCAATTGTGGTAAATGTGCGAAGGAGTTTGCACCTGTAGATATACCATCTCATCTTCCATTTGATGTAAATGCAAGTTCTGTAGGGAGAATGACCAATGAGACCTGCATTTCTCAAAATGTTACTTTTAGAATTGGCGATGAAGAGATAGTTTGTGATAGACAAAAAATTTCTGAACTTTCGGCACCATTTAATGCTATGCTAAAGGGGTATTTCAGCGAATCACGTGCTGAGACTATAGATTTGTCTGAAAATAATATCTCTCCATTTGGTATGAAGGCAATAAGTATTTTCAGTTTGACTGGCAGTTTGATTGAGGTCCCCCCAAATCTTTTATTGGAGATATTAGCTTTTGCAAATAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCTTGGTTTCCTCCAAAGAAGATGCTGTAGAGCTCATGGAATATGCTCTTGATGAGAATTCAACTGTACTTGCTGCATCCTGTTTACAAGTACTTTTGCGTGATCTTCCAAACTGTTTGAATGACAGTCGGGTAGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGCAGTAATGGTTGGGCCAGGTATATTTGCTCTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCCGACAAAACAGTTCATATCCTGGAACGGTTAGTTGAGTTTGCTGAGAATGACAAACAAAGAATCCTGGCTTTACATCAATTGGGATGTGTAAGACTCTTACGGAAAGAATATGATGAAGCACGTCATCTTTTTGAAGGGGCCGTAAACGCAGGCCATATATATTCTGTCGCAGGTTTAGCTAGGCTGGACTTTATAAAGGGCGACAAGTTTTTATCTTATGAGCTGCTGAGCTCGGTCATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAAAGGTCATTATACTGTGACAGTGACAAAAGGTGGGATGACCTTGAGAAAGCAAGTAATTTGGATCCTACACTTGCATATCCTTACATGTACAGGGCTGCCTCATTGATGAGTACGCAGAATGCTCAAGCTGCACTAGCAGAAATCAATAGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTAGAAATACGATTTTTTACCCATCTGACTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTACGTTCAGATTATAGAATGTTTGAGGGACGTGTTGCTGCATCTCAACTCTGCACACTTGTGCGTGAGCATGTTGAACATTGGACAACTGCTGATTGTTGGGCTCGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCTGTTATATACCAAATGCTTGAATCTGATGCGGCAAAAGGTATTCTGTACTTCAGACAGTCATTGCTTCTCCTCAGGTATGTTATGAACTTTTTGAAGGCTCTTGGAGTCAGTGGTCAAGGACTTAGTTTTGCTAGAAATCATAGCAGGTCCAAACCTCCATATAATCCCTCCCTCGTCCCCCTAACAAAAGGTTCTGATATTTGGTTGAACTGTCCTGAGGCTGCTATGCGGAGTTTACAGTTAGCTCAGCAACATGCATCTAGCGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAGGAAGGTCTCCAGAAAGCAGAGGAGTCTATTGGTATCAAAAGATCTTTTGAGGCATTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGCATAGATCCATCATGTTCACCGATTGTTATCTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGGAGTGTTTATGTTGACTGCGGTAAATTGGACTTGGCTGCTGATTGCTATATCAATGCCCTTAAAATTCGACACACCAGAGCTCATCATGGTCTTGCGCGTGTTCATTGCCTCAAAAATGACAAGGCTGCTGCTTATAGGGAAATGACCGAACTTATCAAGAAAGCAAAAAACAATGCATCGGCTTATGAGAAGAGGTCTGAGTATTGTGATCGTGAACAAGCAAAGGCAGATTTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCGTATAGATATCGTGCTGCAGTATTGATGGACAACCACAAGGAAGAGGAAGCCATAGCCGAACTCTCGAGAGCAATTGCATTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTTCATGAACACAAAGAGGACGTGTTAGGTGCGCTAAGAGATTGTCGTGCTGCGCTCTCAGTGGATCCAAACCACCAAGAAATGTTGGAACTTCATAATCGAGTCAATAGACACGAGCCCTGA 2835 0.4226 GGVVEIRELFRLLCPMRSFFPAESCKETHPNALNPQSWLQIERGKLPKLSSYPSSASIESLVKVPQPAVLPFYKPADYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQKANTVHEKIIFGAWLKYEKQEEELIADLLANCGKCAKEFAPVDIPSHLPFDVNASSVGRMTNETCISQNVTFRIGDEEIVCDRQKISELSAPFNAMLKGYFSESRAETIDLSENNISPFGMKAISIFSLTGSLIEVPPNLLLEILAFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSTVLAASCLQVLLRDLPNCLNDSRVVEIFVHANKQQLAVMVGPGIFALFCFLSEVSMNLNSSSDKTVHILERLVEFAENDKQRILALHQLGCVRLLRKEYDEARHLFEGAVNAGHIYSVAGLARLDFIKGDKFLSYELLSSVISSVTPLGWMYQERSLYCDSDKRWDDLEKASNLDPTLAYPYMYRAASLMSTQNAQAALAEINRILGFKLSLECLEIRFFTHLTLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRYVMNFLKALGVSGQGLSFARNHSRSKPPYNPSLVPLTKGSDIWLNCPEAAMRSLQLAQQHASSEHERLVYEGWILYDTGHYEEGLQKAEESIGIKRSFEAFFLKAYALADSSIDPSCSPIVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYREMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHNRVNRHEP 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02781 944 SUPERFAMILY POZ domain 194 290 IPR011333 -
Vimu6g02781 944 Coils Coil 812 839 - -
Vimu6g02781 944 SUPERFAMILY TPR-like 750 935 IPR011990 GO:0005515
Vimu6g02781 944 Gene3D Potassium Channel Kv1.1; Chain A 186 334 IPR011333 -
Vimu6g02781 944 ProSiteProfiles TPR repeat profile. 767 800 IPR019734 GO:0005515
Vimu6g02781 944 PANTHER ETO1-RELATED 16 943 IPR044631 GO:0010105
Vimu6g02781 944 SUPERFAMILY TPR-like 395 796 IPR011990 GO:0005515
Vimu6g02781 944 Gene3D Tetratricopeptide repeat domain 845 942 IPR011990 GO:0005515
Vimu6g02781 944 Gene3D Tetratricopeptide repeat domain 369 561 IPR011990 GO:0005515
Vimu6g02781 944 Gene3D Tetratricopeptide repeat domain 671 844 IPR011990 GO:0005515
Vimu6g02781 944 SMART tpr_5 395 428 IPR019734 GO:0005515
Vimu6g02781 944 SMART tpr_5 693 726 IPR019734 GO:0005515
Vimu6g02781 944 SMART tpr_5 896 929 IPR019734 GO:0005515
Vimu6g02781 944 SMART tpr_5 767 800 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02781 Vimu-Chr6 24424458 24432794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02781 - - gmx:100793740 1626.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02781 6 24424458 24432794 Vimu3g01590 3 29752095 29756484 PCT