Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01590 ATGGGGGATGTTAAACTGATGCGGAGAAGCCTCCGGTCAGCTTGGCAGAGAGCAAACACTGTTCATGAGAAGATTATATTTGGAGCATGGCTGAAGTATGAGAAGCAAGGGGAAGAATTAGTTGCTCAATTGCTAACAGCTTGTGGTAAATGTGAAAGGGAATTTGAACCCATTGATGTAGAATCTCATATTTCTTTTGACAAAGTTATAATTTCCCAGGATAGAGTTTCCATGAATGATGGGAACCAAACTCCACAGTATGTAATCTTTACAATCGGAGATGAGAAGATAGTCTGTGATAGACAAAAGATTTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGGTGTTTCAGGGAATCGCTTTCTGAGACCGTCGATTTGTCTGAAAACAACATCTCTCCTTCAGGTATGAGGGCAATAAACTATTTTAGCTTGACTGGCAGTTTGCTTGATGTCCCTCAGAATCTTTTGGTGGAGATATCAGTTTTTGCAAACAAGTATTGTTGCGAAAGACTAAAACTGGCTTGTGATAGAAAACTTGCATCCTTAGTTTCCTCCAGAGAAGATGCACTGGAACTCATGGAATATGCTGTGGACCAGAATTCATCTGTGCTTGGCGCTTCTTGTTTACAAGTGCTTTTACGCGATATTCCCAACTGCCTGAGTGACAAAAGGGTTGTGGAGTTATTTATTCATGCTAACAGGAAGGAGTTGGAAGTCATGGTTGGGCCTGGTATATTTGCACTTTTTTGTTTCTTAAGCGAAGTTTCTATGAACCTTAGTTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTGGTTGATTTTGCTGAAAATAACATACAGAGAATGCTGGCATTTCATGAATTGGGATGCGTAAGGCTTTCAAGGAAAGAATATGATGAAGCCTATGGTCTCTTTGAGAGGGCTGCAAATGCAGGCCATATTTATTCCGTTGCAGGTTTAGCTAGACTGGATTCTATAAAGGGTGAGAAGCTTTTACCTTATCAGAAGATAAGTTCAGTCATTTGTTCTGGTACTCCTCTTGGATGGATGTACCAGGAAAGATCACTGTACTGTGATGGTGATGTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTGGACCCGACCCTTGTATATCCCTACATGTATAGGTCTGCCACTTTAATGAGGACAGAAAATGTTGAAGGTGCATTGTCTGAAATCAACCGGATTCTTGGCTTCAAACTTTCATTAGAATGTTTGGAACTACGGTTTTTCATCTATCTGGTCCTTGAGGACTACAAAGCGGCGCTCCGAGATGTTCAAGCAATTCTTACCCTGTGTCCATCTTATAAAATGTTTGAAGGGCGTGTAGCTGCATCTCAGCTCTGTACTCTTGTGCGTGAGCATGTTGAACATTGGACAACTGCAGATTGTTGGGCACGATTATATGACTGTTGGTCTGCCGTTGATGATATTGAGTCTCTTTCTGTCATCTACCAGATGCTTGAATCTGATGCTGCCAAAGGTGTTCTATACTTCAGACAGTCGTTGCTTCTCCTTAGGCTAAGCTGTCCTGAGGCAGCCATGAGGAGTTTACAGTTAGCTTGGGAACAGGCATCAAGTGAGCATGAAAGGCTTGTGTATGAGGGGTGGATCCTGTATGATTCAGGACATTACGAAGAAGGGCTCCAGAAAGCTGAAGAGTCTATTACTATTAAAAGGTCTTTTGAGGCCTACTTCCTAAAAGCCTATGCATTGGCTGACTCTAGTGTTGATTCATCATGTTCTTCAACTGTCATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCGGATAATCTACGCAAGGGTCAGGCTCTGAACAATCTTGGAAGTGTTTATGTTGATTGTGGGAAACTAGACGCAGCAGAAGAATGCTATGTGAAGGCCCTTAAAATCCAGCACACGCGAGCCCATCAGGGTCTTGCTCGTGTTCATTTTCTCAGAAATGACAAGGCTGCTGCTTTGAAGGAAATGAGCAATCTTATTGAGAGGGCAAGAAACAATGCTTCAGCTTACGAGAAGAGGTCTGAGTATGGTGATCGTGAACTCACAAAGGCTGATCTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTCTAAAATCCTGTTATGTCGTTGCAGTTTTGATGGACAACCACAAGGAAGAGGAAGCCATTGCTGAACTCTCCAGAGCAATTGCATTTAAAGCTGATTTGCATCTGTTGCATCTTCGTGCAGCATTTCATGAACACAAGGGAGATGTCTTAAGTGCATTGAGAGATTGTCGTGCTGCACTCTCTGTTGACCCAAATCATCAGAAAATGTTGGAACTTCACTATCGTGTTAATAGTCACGAGCCATGA 2409 0.4251 MGDVKLMRRSLRSAWQRANTVHEKIIFGAWLKYEKQGEELVAQLLTACGKCEREFEPIDVESHISFDKVIISQDRVSMNDGNQTPQYVIFTIGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETVDLSENNISPSGMRAINYFSLTGSLLDVPQNLLVEISVFANKYCCERLKLACDRKLASLVSSREDALELMEYAVDQNSSVLGASCLQVLLRDIPNCLSDKRVVELFIHANRKELEVMVGPGIFALFCFLSEVSMNLSSSSDTTAHFLERLVDFAENNIQRMLAFHELGCVRLSRKEYDEAYGLFERAANAGHIYSVAGLARLDSIKGEKLLPYQKISSVICSGTPLGWMYQERSLYCDGDVRWKDLEKATELDPTLVYPYMYRSATLMRTENVEGALSEINRILGFKLSLECLELRFFIYLVLEDYKAALRDVQAILTLCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESDAAKGVLYFRQSLLLLRLSCPEAAMRSLQLAWEQASSEHERLVYEGWILYDSGHYEEGLQKAEESITIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDAAEECYVKALKIQHTRAHQGLARVHFLRNDKAAALKEMSNLIERARNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLKSCYVVAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQKMLELHYRVNSHEP 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01590 802 Gene3D Tetratricopeptide repeat domain 729 801 IPR011990 GO:0005515
Vimu3g01590 802 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Vimu3g01590 802 Gene3D Tetratricopeptide repeat domain 267 454 IPR011990 GO:0005515
Vimu3g01590 802 SUPERFAMILY POZ domain 88 183 IPR011333 -
Vimu3g01590 802 PANTHER ETO1-RELATED 1 801 IPR044631 GO:0010105
Vimu3g01590 802 Gene3D Potassium Channel Kv1.1; Chain A 84 225 IPR011333 -
Vimu3g01590 802 SUPERFAMILY TPR-like 370 686 IPR011990 GO:0005515
Vimu3g01590 802 SMART tpr_5 416 449 IPR019734 GO:0005515
Vimu3g01590 802 SMART tpr_5 754 787 IPR019734 GO:0005515
Vimu3g01590 802 SMART tpr_5 616 649 IPR019734 GO:0005515
Vimu3g01590 802 SMART tpr_5 542 575 IPR019734 GO:0005515
Vimu3g01590 802 SMART tpr_5 287 320 IPR019734 GO:0005515
Vimu3g01590 802 Gene3D Tetratricopeptide repeat domain 489 678 IPR011990 GO:0005515
Vimu3g01590 802 Pfam Tetratricopeptide repeat 617 647 IPR001440 GO:0005515
Vimu3g01590 802 SUPERFAMILY TPR-like 599 794 IPR011990 GO:0005515
Vimu3g01590 802 Coils Coil 657 688 - -
Vimu3g01590 802 SMART BTB_4 86 186 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01590 Vimu-Chr3 29752095 29756484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01590 - - gmx:100785039 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02781 6 24424458 24432794 Vimu3g01590 3 29752095 29756484 PCT