Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02753 ATGGCCGAGCATGGTTTTGATGGTCACGATGAAGGATATGTGCCCGAGGACCCTAATTTTCCTCATAATCACTCCGATGAACATGATGTAGGGACTGTTATTGATGGCTCTGGATTTCCTCATCTGCTGCCTGATGAACATGATGCAGTCGATTTGGTGGAAGATGCCGATTTTCCTCAAAATCATTTTGATGAACATGAACATGATGCTGAAGGTTTGCCTGGGGACACGGACTCTCCTCAGCAGGAGCATGTTGAGGAAGACCATGGTGCTGGAGAAATGTCTGAGAATTTTGATTCTTTGCCTATAGAGGGATCCGAGACCGATTTGAAAGGGATTGAAATAAAAAAGTGGCCGGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTCGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAGATCACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGACCGGCCCATACCACCTGCTGTTGACGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGCAGATAGCGCTTTGACTGCTGGACGATCAGTTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGTTCTGGTTGCACCATACGAGTTCTTGGTTCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAATTGAACTTATTGCAGTACATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTCGAGACACAGGCAAGTCTCCCTATGCAAATATCAGATGTCAGAGCTAACCAGAATGGACCACCACATCAAAATTGGGGTCCTCCTCCGCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCCAATCAACAGTATATGCCACCTACACATCACTATGATAGTTATTACCCGCCCACTGAGTTGCCTCCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGTCTATGCAAGGGATGCTTCTGTCGGAATTCATTCATCAAGTGCGCAACCACAACAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATTGGAGCATCCGGCACTAATATCAGCTATATTCGTCGTGCTAGTGGAGCGAGTATTACAATTCAAGAAACAAGGGGTGTTCCAGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGACACAGGATCCTCTGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTACGCATCTCCCCCGTCTAGCACTGGTGCTCATACAGGCCACGTGCCTTCTGCAGATTATGGGCCCGTATATGGCACCAATTATGGTCTTGTTTTCTCATCACATTCTTCACGTGTACTTCAAAATTTGAATAAGACAACAATTAAGCAGAAAACCAATGTAGATGCGAATGAACAGAAAAAGGACTTGGAAGATGAGATTCTTCCCGATTTTGTTGGTGGGATGGCCAGTGTCCTTGAAGAGATTGCTTGCCTCCATGAGCGGGATGGTTAG 1776 0.4628 MAEHGFDGHDEGYVPEDPNFPHNHSDEHDVGTVIDGSGFPHLLPDEHDAVDLVEDADFPQNHFDEHEHDAEGLPGDTDSPQQEHVEEDHGAGEMSENFDSLPIEGSETDLKGIEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRDLADSALTAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQASLPMQISDVRANQNGPPHQNWGPPPQGFPAPAGGGGGGPAFAPNQQYMPPTHHYDSYYPPTELPPMDKHLHQGPPPVYARDASVGIHSSSAQPQQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPLGGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGLVFSSHSSRVLQNLNKTTIKQKTNVDANEQKKDLEDEILPDFVGGMASVLEEIACLHERDG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02753 591 CDD KH-I_PEPPER_like_rpt3 405 473 - -
Vimu6g02753 591 CDD KH-I_PEPPER_rpt2_like 217 289 - -
Vimu6g02753 591 ProSiteProfiles Type-1 KH domain profile. 215 284 - -
Vimu6g02753 591 MobiDBLite consensus disorder prediction 1 27 - -
Vimu6g02753 591 Coils Coil 462 482 - -
Vimu6g02753 591 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 396 476 IPR036612 GO:0003723
Vimu6g02753 591 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 212 296 IPR036612 GO:0003723
Vimu6g02753 591 MobiDBLite consensus disorder prediction 64 94 - -
Vimu6g02753 591 MobiDBLite consensus disorder prediction 320 351 - -
Vimu6g02753 591 SMART kh_6 123 196 IPR004087 GO:0003676
Vimu6g02753 591 SMART kh_6 214 289 IPR004087 GO:0003676
Vimu6g02753 591 SMART kh_6 404 474 IPR004087 GO:0003676
Vimu6g02753 591 ProSiteProfiles Type-1 KH domain profile. 405 469 - -
Vimu6g02753 591 Pfam KH domain 407 470 IPR004088 GO:0003723
Vimu6g02753 591 Pfam KH domain 218 284 IPR004088 GO:0003723
Vimu6g02753 591 Pfam KH domain 127 179 IPR004088 GO:0003723
Vimu6g02753 591 Gene3D - 124 293 - -
Vimu6g02753 591 ProSiteProfiles Type-1 KH domain profile. 124 191 - -
Vimu6g02753 591 Gene3D K Homology domain, type 1 392 481 IPR036612 GO:0003723
Vimu6g02753 591 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 119 178 IPR036612 GO:0003723
Vimu6g02753 591 CDD KH-I_PEPPER_rpt1_like 124 192 - -
Vimu6g02753 591 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 117 494 - -
Vimu6g02753 591 MobiDBLite consensus disorder prediction 64 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02753 Vimu-Chr6 24090460 24095591 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02753 K21444 - gmx:100799901 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02753 6 24090460 24095591 Vimu3g01523 3 28799346 28811806 PCT