Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01523 ATGCAATGGTCTACAATTGCCTTAGAACATGCTCAAGAGCACGACATCAGAAGGAGATTGATCAAAGGAAAAGAAGGTTGTCTATTGCCTGCTTTTGGTTGGTTGCTGAGGGGAATGAAGCCTGGTCCGAAATCACCCAGAAGGGTTACGTCTGAGACTACTTACATGAATGATCTCGAACCAGACGACATTCCCCTCAACTTTTTTATGTATTTATGGCAGACAGGGGAAGTGTGGGAGCCGATGCAGGGTTTTGTTTTAAGGCATTGGAAGTTACGGAGTTTGATTTTAGGGTTTTGTGGATTTCGAACGGTGATTCATGTTCATACTGATGAGTTGTTGTTTCATGTGTTTGGTTTCGTAGTTGCTGGGATGTCTGGAGAAGTTTATGACGGACAAGATGCTGGCTATGTGCCTGAGAACCCCGAGTTTCCTCAAAATCATTCTGAGGAACACGATGGAGGAAATGTGATTGATGACTCAGGGTTTCCGCAACTGCAGCCCGATGAACATGATGAGGCCAATTTGGCCGTGGATGCTGATGTTCCCGAAAATAATTTTGATGGGAACGATGGAGAAGGTTTGCCTGAAAACCCTGATTTTCCTCCGCAAGAACATGCTGAGGAGCAGCATGTTGAAGGAGATATGACTGAGAATTTAGGCTCTGAGGAGAAACAGGAATCTCAGGAGGAGTTGAAAGGAGGTGAAGTAAAAAAATGGCCAGGGATGTTGGTTCCTGTGCAAAAAGTTGGCAGTATTATTGGTCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCCCCTGGAACTGCGGAAAGAGCTATTGGAGGTGAACCTGGCGGGAAAATGAATGGGCTGGAAAAGGGGTTGATTGTGCAAGAAAGGGTGGATCTGGCTATCACAGGCAATCTGGCTGCTATTGTTTCAATGCCAAAGTGGTGTACTATGAGTTTCTTGTGGCCACCAGCTGCTGTGATGCTCTGCTGCAGTGTTATAGTGCCGTGGTTGGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCACCATACCTCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAGGTTGTCAATGTAGAGCCTCATCCTGCTGATGGTGCATCAGGTGCAGGACGCACAGTTATTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGGAGCTTGATTGGGAAACAGGGAGCCACCATAAAATCCTTTCAAGATTCCACAGGTTGCAATATACGTGTTCTTGGTTCAGATGATAGTGTTGTTGAAATTCAAGGAGAATCCTCTGGGGTTCACAAGGCAGTTGAACTTGTTGCACTTCATCTACGGAAATTCTTGGTTGACCGCAGCATAGTTGGTGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGGGCAAACCAGAATGTGCCACATGGTCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGTTAGTGGTGGTGCACCTGCTTTCCCACCCAATCCTCAGTATATGCCCCCTTCGCATAACTATGATAATTACTACCCACCAGCTGATCTGCCTCCCATGGACAAGCACCTACATCAGGGTCCTCCACCTGCCTATGGAAGAGATGCTTCCATGGGAATTCATTCATCCAGTGCGCAACCGCAACAATCTGTTGTGACTAAGGTCACACAGCACATGCAAATTCCTCTTTCCTATGCAGATGCTGTTATTGGAGCATCAGGGACAAACATCAGCTACATCCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCCGGTGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAACTAGTGCAGAATTTCATGGCTGAAGCTGCTAGTGCAACTCAGGAACATATGGGGGGATCAATGAACCAAGGTTACAATTCCTATCCTACCAGTGCTCCTGTCTACCCATCTCCGCCCTCAAGCGCTGCTGGTCATGCAGGCCATGTACCTTCCGCAGATTATGGACCCGTTTATGGCACCAATTATGGCTATTGA 2091 0.4687 MQWSTIALEHAQEHDIRRRLIKGKEGCLLPAFGWLLRGMKPGPKSPRRVTSETTYMNDLEPDDIPLNFFMYLWQTGEVWEPMQGFVLRHWKLRSLILGFCGFRTVIHVHTDELLFHVFGFVVAGMSGEVYDGQDAGYVPENPEFPQNHSEEHDGGNVIDDSGFPQLQPDEHDEANLAVDADVPENNFDGNDGEGLPENPDFPPQEHAEEQHVEGDMTENLGSEEKQESQEELKGGEVKKWPGMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAIGGEPGGKMNGLEKGLIVQERVDLAITGNLAAIVSMPKWCTMSFLWPPAAVMLCCSVIVPWLVMVSAKEEPDRTIPPAVDGLLRVHKQVVNVEPHPADGASGAGRTVITRLLVADTQAGSLIGKQGATIKSFQDSTGCNIRVLGSDDSVVEIQGESSGVHKAVELVALHLRKFLVDRSIVGVFETQMQRPDVRANQNVPHGPPHQPWGPPQGFPAPGPVSGGAPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYGRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQEHMGGSMNQGYNSYPTSAPVYPSPPSSAAGHAGHVPSADYGPVYGTNYGY 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01523 696 ProSiteProfiles Type-1 KH domain profile. 391 451 - -
Vimu3g01523 696 CDD KH-I_PEPPER_like_rpt3 570 638 - -
Vimu3g01523 696 Pfam KH domain 572 635 IPR004088 GO:0003723
Vimu3g01523 696 Pfam KH domain 394 451 IPR004088 GO:0003723
Vimu3g01523 696 Pfam KH domain 243 284 IPR004088 GO:0003723
Vimu3g01523 696 Gene3D K Homology domain, type 1 242 318 IPR036612 GO:0003723
Vimu3g01523 696 MobiDBLite consensus disorder prediction 476 566 - -
Vimu3g01523 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 243 286 IPR036612 GO:0003723
Vimu3g01523 696 Gene3D K Homology domain, type 1 557 646 IPR036612 GO:0003723
Vimu3g01523 696 MobiDBLite consensus disorder prediction 133 169 - -
Vimu3g01523 696 Gene3D K Homology domain, type 1 391 458 IPR036612 GO:0003723
Vimu3g01523 696 CDD KH-I_PEPPER_rpt2_like 393 456 - -
Vimu3g01523 696 ProSiteProfiles Type-1 KH domain profile. 570 634 - -
Vimu3g01523 696 MobiDBLite consensus disorder prediction 202 237 - -
Vimu3g01523 696 MobiDBLite consensus disorder prediction 181 237 - -
Vimu3g01523 696 SMART kh_6 390 456 IPR004087 GO:0003676
Vimu3g01523 696 SMART kh_6 569 639 IPR004087 GO:0003676
Vimu3g01523 696 SMART kh_6 238 312 IPR004087 GO:0003676
Vimu3g01523 696 Coils Coil 627 647 - -
Vimu3g01523 696 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 243 660 - -
Vimu3g01523 696 ProSiteProfiles Type-1 KH domain profile. 243 274 - -
Vimu3g01523 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 385 464 IPR036612 GO:0003723
Vimu3g01523 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 561 641 IPR036612 GO:0003723
Vimu3g01523 696 MobiDBLite consensus disorder prediction 487 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01523 Vimu-Chr3 28799346 28811806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01523 K21444 - gmx:100799901 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02753 6 24090460 24095591 Vimu3g01523 3 28799346 28811806 PCT