LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02663	ATGCTACTTCTCTCTTCCATTTATAATCACAATTCATCAATGGCAGCTTCTTTCCATTCCCTCACATTCTTCTCCTCACTCTCCAAAACTCTTCACATATCACGTTCATCTTCAGTCCCACCTATGATTTTTCTTCACAGTAGCACACACTCTTCATTCAATGGCCAATCTGTGAACCTGCCACGTTTGAGGTTATCCAAGCTAAAGCAAAATCCTCCAAAACACTTGCCTGCTATGATGATGGCCAAGCCATCCATACAGTTCATTAGGGGAACTGATGAACAGACAATACCAGACGTGAGGCTTACTACATCACGTGATGGAACAAATGGGATGGCCATCTTCAACTTTGATCAACCCTCAGTTTTTGATTCATCTCGTGAAGTTGCTGATATCACTGGTTTATACATGATTGATGAGGAAGGGGTTCTTCAGTCTGTGGATGTGAGTGCTAAGTTTGTCAATGGAAAGCCCTCAGGAATTGAAGCCAAGTATGTGATGCGGACTCCAAAGGATTGGGACAGATTCATGAGATTTATGGAACGATATTCTGATGCAAACGGTTTGCAGTTCATTCAAAAATAA	585	0.4171	MLLLSSIYNHNSSMAASFHSLTFFSSLSKTLHISRSSSVPPMIFLHSSTHSSFNGQSVNLPRLRLSKLKQNPPKHLPAMMMAKPSIQFIRGTDEQTIPDVRLTTSRDGTNGMAIFNFDQPSVFDSSREVADITGLYMIDEEGVLQSVDVSAKFVNGKPSGIEAKYVMRTPKDWDRFMRFMERYSDANGLQFIQK	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02663	194	PANTHER	-	15	194	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Vimu6g02663	194	Hamap	Photosystem II reaction center Psb28 protein [psb28].	83	192	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Vimu6g02663	194	NCBIfam	photosystem II reaction center protein Psb28	86	192	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Vimu6g02663	194	Gene3D	Photosystem II Psb28	81	194	IPR038676	-
	Vimu6g02663	194	FunFam	Photosystem II reaction center Psb28 protein	84	194	-	-
	Vimu6g02663	194	Pfam	Psb28 protein	86	191	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02663	Vimu-Chr6	23305746	23309400	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02663	K08903		-	gmx:100306491	259.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02663	6	23305746	23309400	Vimu6g02663	6	23305746	23309400	ECH
	Vimu6g02663	6	23305746	23309400	Vimu3g01474	3	27733006	27734375	PCT