Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01474 ATGGCAACTTTGCACTCTCTTGCATTGTCCTCTCCGTTCTCCAGCTCACTTCACAAACCACGCTCATACTCAGTCCCATGTTCAATTGTTCATCAAAGTACAAACTCCTCATTCAATGGTCAAACTTTGCGGATGCCATGTTTGAGGTTACGTATGGTAACACAAAGCAGTGACATGCAGATGCCTGTAATGATGATGTTGAAACCAAAGATACAGTTCATCCAGGGAACTGATGAGCAAACAATTCCTGATGTGAGGCTGACAAAATCAAGGGATGGAACAAATGGCATGGCTATCTTCACATTTGATCAACCTTCAGTTTTCGATTCTTCAGGTGAAATAGGTGATATCACTGGATTTTACATGATTGATGAAGAAGGAGTCCTTCAGTCAGTTGATGTAAATGCTAAATTTGTGAATGGTAAGCCCTCAATAATTGAAGCCAAGTACATAATGCGGAGTCCAAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATATTCTAATGCAAATGGTTTGCAATTCATCAAAAAATGA 540 0.4037 MATLHSLALSSPFSSSLHKPRSYSVPCSIVHQSTNSSFNGQTLRMPCLRLRMVTQSSDMQMPVMMMLKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDITGFYMIDEEGVLQSVDVNAKFVNGKPSIIEAKYIMRSPREWDRFMRFMERYSNANGLQFIKK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01474 179 Hamap Photosystem II reaction center Psb28 protein [psb28]. 68 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vimu3g01474 179 NCBIfam photosystem II reaction center protein Psb28 71 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vimu3g01474 179 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01474 179 Gene3D Photosystem II Psb28 69 179 IPR038676 -
Vimu3g01474 179 PANTHER - 1 179 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vimu3g01474 179 Pfam Psb28 protein 71 176 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vimu3g01474 179 FunFam Photosystem II reaction center Psb28 protein 69 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01474 Vimu-Chr3 27733006 27734375 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01474 K08903 - gmx:100780777 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01474 3 27733006 27734375 Vimu3g01474 3 27733006 27734375 ECH
Vimu6g02663 6 23305746 23309400 Vimu3g01474 3 27733006 27734375 PCT