Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02618 ATGGTTGGTGTTATTTCGTTGGTAACTGGGATGATTGGTCCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAAGTTACTCAAGGAATTGATGCTGCCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGAATTGGGTTGGAGACAACACGAGTGTTGGCACTTCGGAAGGTTCATGTGATCATTGCAGTAAGAAACATGGTGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAAAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATCTGTGCTCTCTCAATTCTGTGACATCCTTTGTAGACAACTTTATAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTAATGTTCTGCCCCTTCGAACTCTCAGAGGATGGGATCGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAAAAAATGAAACAAACAGCACAAGCCACTGGAGTAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAATTACACTTACATAAAAGGGATTAGATTCAATAAAATCAATGAGCGAAAAGGTTATGGTAACAAGAAGGCTTATGGACAGTCCAAGTTAGCAAACATACTGCATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATCACAGCAAACTCAGTCCATCCAGGAGTAATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGATCTTCTCCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAACGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCTATGCAAGCCAAGTGCGCATGCCAAAAACAAAGATCTAGCAAAGAAACTCTGGGATTTCAGCAACGAGTTGATCAAATCGATTTTAAAAGTTTGA 972 0.4198 MVGVISLVTGMIGPSGFGSASTAEQVTQGIDAANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFIALDLPLNILINNAGVMFCPFELSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGVEGRIINLSSIAHNYTYIKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNLCKPSAHAKNKDLAKKLWDFSNELIKSILKV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02618 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Vimu6g02618 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Vimu6g02618 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Vimu6g02618 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Vimu6g02618 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Vimu6g02618 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vimu6g02618 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vimu6g02618 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vimu6g02618 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vimu6g02618 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vimu6g02618 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Vimu6g02618 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Vimu6g02618 323 Gene3D - 25 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02618 Vimu-Chr6 22788787 22793462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02618 35 244 Miscellaneous Gene Families AT2G29340 28.704 2.60e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02618 K11153 - gmx:100781156 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02618 6 22788787 22793462 Vimu6g02618 6 22788787 22793462 ECH
Vimu6g02618 6 22788787 22793462 Vimu3g01352 3 25031000 25036548 PCT