Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01352 ATGGTGGGTATCATTTCGTTGGTCACAGGGTGGCCTGGACCTAGTGGATTTGGATCTGCCTCAAGTGCTGAACAGGTTACTCAGGGAGTTGATGCCAGTAACCTCACTGCAATCATCACAGGAGGAGCAAGTGGAATAGGGTTGGAGACAGCACGAGTTTTGGCTCGCCGAAATGCCCATGTGATTATTGGTGCTAGGAACATGGAGTCTGCAAAGGAAGCTAAACAAGTGATACTGCGTGAGAACGAATCAGCTCGCGTGGACATATTGAAGCTGGACCTTTGCTCAGTGAACTCTGTCAGAACATTTGTGAACAACTTCATAGCGCTTGCTCTTCCTCTCAACATCTTAATAAACAATGCAGGAGTCATGTTCTGCCCTTATCAGAAAACAGAAGATGGGATTGAAATGCAGTTTGCAACTAATCATCTTGGTCATTTTCTCTTGACGAACCTTCTTCTCGATAAGATGAAACAAACAGCAAAAGATACTGGAATAGAAGGCAGAATCATAAACCTGTCATCAATTGCTCACGTCTACACTTACGAAGAAGGGATTCGCTTTGATAACATCAATGAAGAAAACGGATACTCTGACAAGAAGGCATATGGACAGTCCAAGTTAGCCAACATATTACACGCAAAAGAGCTTTCTCGTCGCTTACAGGAAGAGGGTGCTAACATCACGGCCAACGCTGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAATTTTCTGAAGATATTTACCTTCTTCATATGGAAGAACATTGCGCAGGGAGCAGCCACAACGTGCTTTGTTGCTCTACACCCAAGCTTGAAAGGGGTATCTGGGAAGTACTTTCTGGATTGTAATGAGTATCAGCCAAGTGCACATGCCTCAAACGAACTCTTAGTCTTCCTCCCCTTCCCTTCCTCCAACCAGTGCATCCCCCTCCCAACCAGTACTTCCCTCCGTGCAGCTCGTAACTTGGTGCTTGACCTTAGGCTGTCAGCGTAG 1020 0.4578 MVGIISLVTGWPGPSGFGSASSAEQVTQGVDASNLTAIITGGASGIGLETARVLARRNAHVIIGARNMESAKEAKQVILRENESARVDILKLDLCSVNSVRTFVNNFIALALPLNILINNAGVMFCPYQKTEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKDTGIEGRIINLSSIAHVYTYEEGIRFDNINEENGYSDKKAYGQSKLANILHAKELSRRLQEEGANITANAVHPGVIMTPLMRHSSLLMNFLKIFTFFIWKNIAQGAATTCFVALHPSLKGVSGKYFLDCNEYQPSAHASNELLVFLPFPSSNQCIPLPTSTSLRAARNLVLDLRLSA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01352 339 Pfam short chain dehydrogenase 36 183 IPR002347 -
Vimu3g01352 339 Gene3D - 25 307 - -
Vimu3g01352 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vimu3g01352 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Vimu3g01352 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vimu3g01352 339 CDD retinol-DH_like_SDR_c_like 36 305 - -
Vimu3g01352 339 PANTHER RETINOL DEHYDROGENASE 14 298 - -
Vimu3g01352 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Vimu3g01352 339 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Vimu3g01352 339 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vimu3g01352 339 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vimu3g01352 339 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Vimu3g01352 339 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01352 Vimu-Chr3 25031000 25036548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01352 35 242 Miscellaneous Gene Families AT2G29340 29.439 5.85e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01352 - K11153 gmx:100807056 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01352 3 25031000 25036548 Vimu3g01352 3 25031000 25036548 ECH
Vimu6g02618 6 22788787 22793462 Vimu3g01352 3 25031000 25036548 PCT