Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02608 ATGTTTCCTTTATCGTTTTCTTTCTCCTCATCATTTAATTGCTATCTAATTTGTTTCAGTTTCAAGTCATCAGCAATGAAGACAGAATCGAAGAAGTTATCCAAGTCTTCGTGGCCTAAATTAGCCATGAGGAAGTGGCTCAATACGAAGAACGGTGCTGAGAAGTTTCAGTCAGACAACGATGCAACAGCAACTGCGACGGAAAGAAGAAAGAGTTTCTCAGACGAAGATCGTTACGTCGCCGTACCGGATGATGATTTCTCAGAGGGAAAGAGTGGAATGAAAGGTTTGGTGCTTGGGAAGCAATCAAGTCCTGAAAGTGGCACTGGGGCTATGAACCTTAGGATGTTCGTGGGAACGTGGAATGTGGGAGGGAAATCACCCAAGGAAGGTTTGAGTTTGAGGAATTGGCTCACGTCTCCTTCCGACCCTCACATCTATGTAATTGGGTTCCAAGAAATCGTACCGCTAAATGCGGGGAACGTACTTGGGCCGGAGGACAGTGGCCCAGCGGCGAAGTGGTTGGGCCTTATACATGAAGCCTTGAACACCAACAACTATGACGACGATGAGAACAATGGTGACCACGACCTCAAGTGTAGGCAAAGTTTTTCAGATTTTGTCCCTTTAGATGGTGAGTTCGATAATGGAGAAAAGTTTCCGAAGACTTCACGACGCTATTGCTTAGCAGCAAGCAAGCAAATGGTTGGTATTTTCTTGTGCGTGTGGGTTCGAGAGGATCTTTGCAACCATGTTTCCAATTTGAAAGTGTCCTGTGTTGGCAGGGGCATCATGGGTTATCTTGGAAATAAGGGTTCAACATCGATTAGCATGACATTGTACAACACCACGTTCTGCTTCGTTTGCACCCACTTGGCTTCTGGGGAGAAATTTGGTGACGAATTGCGAAGAAACTTGGACGTCTCGGAAATCTTGAAGAAAACCAAATTTTCTCACTCCTTTAAATCTCTTCCTCATTCTCTCCCTCCTGAAAGTATTCTGGAACACGATAATATTATTTGGCTTGGCGACTTGAATTATCGACTAGCTGCTGGCTATGAGGACACACATGAACTACTAAAGAAGAATAATTGGCAGGCATTACTGGAGAAGGATCAGCTAAGGATAGAGCAGAGGGCTGGTCGAGTATTCAAAGGTTGGAATGAAGGGGACATATACTTTGCTCCTACTTACAAATACTTGACCAATTCTGATCACTATGTCGCCCAATCCTCCAAATCCAGGGAAAAACGACGAACTCCTGCTTGGTGCGATCGAATTCTTTGGAAAGGAGAAAGGCTGAATCAGATGTGGTATGTTCGGGGAGAGTCCAAGTTCTCAGACCACAGGCCAGTTTATTCACTATTCTCTGTTGAAGTGGACTTGACGAGCAAGAATCGAGTTCCCAGGTCCTGTTCGTTAAAACCCTTGACAAGTACTGCGTTGTCATCAACTTGTGCTGCTAAAGTCCAAGCAGAAGAACAACTCTTCCTGCTAACGAGAGCTCAGAGTTGCATCGACACAGTTCCCAGGTTTTAA 1539 0.4496 MFPLSFSFSSSFNCYLICFSFKSSAMKTESKKLSKSSWPKLAMRKWLNTKNGAEKFQSDNDATATATERRKSFSDEDRYVAVPDDDFSEGKSGMKGLVLGKQSSPESGTGAMNLRMFVGTWNVGGKSPKEGLSLRNWLTSPSDPHIYVIGFQEIVPLNAGNVLGPEDSGPAAKWLGLIHEALNTNNYDDDENNGDHDLKCRQSFSDFVPLDGEFDNGEKFPKTSRRYCLAASKQMVGIFLCVWVREDLCNHVSNLKVSCVGRGIMGYLGNKGSTSISMTLYNTTFCFVCTHLASGEKFGDELRRNLDVSEILKKTKFSHSFKSLPHSLPPESILEHDNIIWLGDLNYRLAAGYEDTHELLKKNNWQALLEKDQLRIEQRAGRVFKGWNEGDIYFAPTYKYLTNSDHYVAQSSKSREKRRTPAWCDRILWKGERLNQMWYVRGESKFSDHRPVYSLFSVEVDLTSKNRVPRSCSLKPLTSTALSSTCAAKVQAEEQLFLLTRAQSCIDTVPRF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02608 512 SUPERFAMILY DNase I-like 111 464 IPR036691 -
Vimu6g02608 512 Gene3D Endonuclease/exonuclease/phosphatase 101 479 IPR036691 -
Vimu6g02608 512 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 43 474 IPR045849 GO:0004445
Vimu6g02608 512 SMART i5p_5 112 464 IPR000300 GO:0016791|GO:0046856
Vimu6g02608 512 Pfam Endonuclease/Exonuclease/phosphatase family 119 449 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02608 Vimu-Chr6 22692464 22696312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02608 113 460 Acyl Lipid Metabolism Gene Families AT1G65580 29.293 7.96e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02608 - - vun:114176714 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02608 6 22692464 22696312 Vimu3g01382 3 25984304 25988910 PCT