Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02601 ATGCGCTTCCACCACACGCCCGCCACCGCCGTCACTCTCTCCCCGCCCGCTGCTGACTCCGAGACTGCGCTCACCGAGGAGGAAGCCGAGAGAGTTCTGGAGGAGCGGCTCAGTGCCAACCCTGCCGACGTCGACGTGCTCCGCGCGCTCATGGAGTGCAAGATCAAAGCGCGCAAGATTGACGAAGCGTTCAGAGTTCTGGACCGTCTTATCGAGCTCCAGCCGGAGGAGTACGAGTGGCCGCTGCTGAAGGCCAACATGCATATCTACAACGACAACCACGCGGCTGCACGTGAACTGTTCGAGGAAATGTTGAAGAAGGACCCGCTCCGCGTGGAAGCGTTCCACGGCCTCGTCATGGCGACTTCGCAGTTGAACGAGCCGTTGAAAGCGTTGTTGAAAAGAGTGGAGGAGGCGACTGAGGCGTGCAAGAAGCAGAATAGGAACTCGGATGTGAGGGACTTCCGGCTCTTGATCGCGCAGATTAAAGTGATGGAAGGGAATTTCCCTGAGGCTCTTAAGGCTTATCAGGATTTAGTGAAGGAAGAGCCCAGGGATTTCAGGCCTTATTTGTGTCAGGGTATTATATATACCCTCTTAAGGAAGAAAGACGAAGCTGATAAGCAGTTTGATAAGTTTCGCAGGCTTGTTCCTAAGGACCATCCTTACATGGAATATTTCGAGGACAACATGTTCGCGACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCAGGTGTTAGGGACTGA 753 0.5432 MRFHHTPATAVTLSPPAADSETALTEEEAERVLEERLSANPADVDVLRALMECKIKARKIDEAFRVLDRLIELQPEEYEWPLLKANMHIYNDNHAAARELFEEMLKKDPLRVEAFHGLVMATSQLNEPLKALLKRVEEATEACKKQNRNSDVRDFRLLIAQIKVMEGNFPEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFDKFRRLVPKDHPYMEYFEDNMFATKFFSQKLEREGAGVRD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02601 250 PANTHER TRANSMEMBRANE PROTEIN 137 222 - -
Vimu6g02601 250 Coils Coil 129 149 - -
Vimu6g02601 250 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g02601 250 Pfam Tetratricopeptide repeat 28 85 - -
Vimu6g02601 250 Gene3D Tetratricopeptide repeat domain 13 236 IPR011990 GO:0005515
Vimu6g02601 250 Pfam Tetratricopeptide repeat 157 185 IPR019734 GO:0005515
Vimu6g02601 250 SUPERFAMILY TPR-like 27 221 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02601 Vimu-Chr6 22598993 22599745 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02601 - - vra:106756779 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02601 6 22598993 22599745 Vimu3g01409 3 26751246 26754308 PCT