Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02516 ATGTTTATCTCTACTTCGCTTGCATCTGATCCACTTCAAACTTCTCGTTGCCTTTGTTATCTCTTACTTGACCTTTTCCATTCACTGAGGGTTTTCACCTCTCTCGCTTTTTCTGCTGCGGTGTTTGCTTCTTCTCCGATGAGGAAATTCGAGTGGAGAAGTAATGATTATGGCTTTATTGGTGCTGGTATGATATCAAGAAGTAAAATGGAGGCAGAGAGATTGAGTCCCAACCACCCTCCTAGCTTTCTCCGTCAGTCACTTCCTGCTATTGTACCTATGCTTTTGATTTCTACAGGATATGTTGACCCTGGAAAGTGGGTAGCGACCGTTGAAGGTGGTGCACGGTTTGGGTTTGATCTGATGGCTTTCATGCTTATTTTCAATTTTGCTGCTATATTCTGTCAGTACATATCTGCAAGGATTGGCGTAGTTACAGGAAAAAATCTTGCACAGACAGCTGGAAGAGCACTTTCTGAGTGCTTAGCCAGGGGTTCTTCATCTATCAAAGAGAGGGTTCCCGGATTTCCTTGCTTTACTAACGAGCTAACCTACGAACGCTCCGTGAGCTACGCGAAGGGACGGACAGGAGGCCATTTACACAAGGCGCGGCTTACTGACGAGTATGATACATGGACATGTATGCTCCTTGGAGTTCAAACAGAACTTTCAGTGATAATGCTAGACCTTAACATGATCTTGGGCATGGCACAAGGGTTAAATCTTATTTTTGGGTGGGACTTGTTCAGTTGTGTATTTTTAGCTGCTACTGGTGTTGTTTTTCACATACTTCTTGCAGTCTTACTTGACATTGAGAAGGCAAAATTCCTAGGCCAGTTTGTTGCAGGCTTTGTATTGGTTTCTTTTATACTTGGAATGCTTATCAATCAACCGGAAATTCCATTTTCTATGAATGGAATATTAATAAGATTGAGTGGGGAGAGTGCATTTGTGCTAATGAGTCTCCTAGGAGCAAATCTTGTACCTCACAACTTTTACCTGCATTCGTCTATTGTACAGTGGCATCAGGGACCGGCAAACATTTCAAAGAATGCTTTGTGTCATAACCATTTTTTTGCCATATTATGTGTTTTCAGTGGTCTTTATCTGGTAAATAATATGTTGATGACCTCCTCGGCAAATGAGTTCTACAGCACAGGGCATGTTCTGCAAACTTTCCAGGATGCATTGTCACCAATGGAACAGGTCTTACGTAACCCAATAGCTCTACTTGGGTTTTTACTCCTTTTGTTTCTTGCAAATCAAATCACCGCATTAAGTTGGAGTTTAGGTGGAGAAGTAGTAGTGCAAGGTTTCTTAAAATTGGATATTCCGGGTTGGCTTCACTATGCTACAATTAGAGTGATTACTGTTTTGCCTGCCCTTTATTTTGTCTGGAGTTCAGGAGCCGAAGGGATGTATCAGCTACTATTATTCACTCAAGTTTTGGTAGCTCTACAACTTCCATCTCTAGTGATCCCCCTTTTTCGTGTAGCAACATCTAGATCAATAATGGGTGTACACAAGATTTCCCAGTTTCTGGAACTTTTGGCATTGATCATATTCATTGGGATGCTTGGCTTGAATATTGTATTTGTGGTAGAAATGATGTTTGGAAATAGTGATTGGGCGAGTGATTTGAGATGGAATGTGGGGAGTGGTGTATCTATCTCATATTTAGTTCTTCTAACAACTTCCGTTTCATCGTTATGTTTTATGCTTTGGTTAGCAGCCACACCTTTGAGATCTGTCAGTGTTCGATTAGATTCTAAGACGTGGAACTGGGATATGCCAAACGCTCTACCTAATCCACCGATTATTAGCGAGAAATCTTATTTAACTGAAACAAGATGTCGTGAAGATGATGAACCTATGCATATACAGGAACCCACACCAGCTGTAACAAAGACCTTGGAGTACTCTGATGTATCACATCCAAGTTTTCATCCTGCTCTACCTAAATCTGTAATGGAACCTGAATTCCACGTGAATGTTGCAAGGAAGAATCATTCTGATATGTTGGCTTCCACATCAGAGTCTGAAGTTGTAACAACAGTGATTAATGAGATTTCCCATTCTCAATTGGAAGACACCAAAACTATAACAATGGAAACAAATAACCCAATTGAAAAAACTATGGAAGTTGAAGGAGATTTAAATGTTGAAAGGGATGATGATGATGATGGTGATTCGTGGGAAGCTGAAGAACCTTCCGGATTTGTGTTAGCAAATGTACCATCTTCAACATCAGATGGTCCTGCATCATTCAGGTGTCTTAATGGAAAGAGTGATGAAGGAGGGAATAGCTTTGGAAGTCTTTCGAGAATAGAAGGCTTAGGGCGTGCAGCAAGGCGTCAGCTAGCTGCTGTTCTTGATGAATTCTGGGGACAACTATTTGATTTCCATGGCCATATAACCCAGGAAGCAAAGGCTAATAAAATTGACGTTTTGCTGGGAGTGGGTGTCGATTTAAGACCTACCTGTTTTTTGCAAAAAGTGGATGTATGTAGAAAGGACTACTCTGAATACTCAGGATCTTTAGGAGGTAGGGTTTCTAACACTTCAGCGAACTCTGATTTATATGATTCTTCCAAGCAGCCTTTGATGCAATGTAATTCAGAGTCTGGCCTCCAAAGGAGTACTTCCTCAATGCGGCCAGATCACATCCAATTATTGGATGCATATGTGCAGAACTCGAGCCACAATCTCCTTGATTCTGGTGAGAGGCGCTATTCCAGTGTACGTAATCTACATTCATCGGAGACTCGGGATTATCAACCAGCTACCATTCATGGTTATCAGACTGCATCTTATCTTAGTCGACTTGGTAAAGACGGAGATTCTGCTAACCTAAATGGTCCAGTGGACTTGTCATCACTGAAATCCCCTTCGATAGTTAATGCAAAGTACAGGGAATCTCTTGCGTTTGCTTTGGGGAAAAGGTTGTGTAGTGGTCCAAGTGTAGGCCAACCCCCTGGGTTCCCAAAAGTAGCTATCACTAGAGATTGCCAATTACAATCTCTGAGGTCTTATAACGATTTTTACCCTTCTGGATCTGCAGATAATACACTCAACTCAGTTAATACTAAAAAGTACCACAGTTTGCCAGACATTTCAGGATACTTCTTCCCCTACAGGTCTGATCTAAATGCTTATGTGCCTGATAAAAATGCTCCATGGGATGGTGTCTGTGGGACTAGTTATGAAAGATCACCATATTCAAATTCTGGAACAAGAACAGGGAGTCATTTGGCCTTCAATGAACTCTCTTCATCTAAAGCTTACAACGAGGCACTCTCTTCACAGTTGAGCTCTGGTTTTGATGCTGGATCTGCACGGTCTAGACTGCCTTGTGAGCAGTTTGGGCCTGAGAAAAATAGTAATATTGTTATGGAAGGTGTGGGAAATAGGCCTAATGCAATAGTTCAAGAAACTATGGATATAGAGAAGAAACTTCTTCTGTCAGTTAGACTTTGCATCGTGAAGCTCTTAAAATTGGAGGGTTCGGAGGGGTTGTTTAGAAAGAATGGTGGAGCTGATGAGGATTTGATTGATTGTGTCGCCTCGAGGGAGAAGGTTGTTTGTGAATTTGAAACTAGGGAGACGAGTCAAGTCAATCATGTGGGTGAAGCTCACTATTGTCTTTCTGATAGGAAACTTGGTTTTTCTTCGTCTCCAGTTCCTTATTGCGGGGAGGGATGTATATGGAAAACTGATTTAATAATAAGCTTTGGGGTGTGGTGTATCCACAGCATTCTTAACCTTACACTTGTGGAAAGCCGGCCGGAGCTTTGGGGGAAATACACCTATGTTCTCAATCGCCTCCAGGGCATCATTGATCCAGCTTTCTTTAAGCCTCGTAGTCCCTTGGCCCCATGCTTTTGCCTTCAAGTTCTACCCGCGCATCAGCGAAAGTTAAACCCTCATCTTTCAAACGAGATGCTACTCCCAACTGCAAAACCCAGCCGAGGCAAATGCACAACTGCATCAGCGTTGCTTGAGCTTATCAAGGATGTGGAGCTTGCGATCTCAAGCAGGAAAGGACGTACAGGAACTGCTGCAGGTGATGTTGCTTTCCCTAAGGGGAAGGAAAATTTGGCGTCTGTTCTCAAACGGTACAAGCGGAGGTTATCTAATAAGCCACCGGGCACTAATGAAGGCACAGGTTCACGAAAGACCCCACGTAAGTACCTTACAACCAGTAGCATTTGCATTGACAGAATCGGTGCT 4230 0.4243 MFISTSLASDPLQTSRCLCYLLLDLFHSLRVFTSLAFSAAVFASSPMRKFEWRSNDYGFIGAGMISRSKMEAERLSPNHPPSFLRQSLPAIVPMLLISTGYVDPGKWVATVEGGARFGFDLMAFMLIFNFAAIFCQYISARIGVVTGKNLAQTAGRALSECLARGSSSIKERVPGFPCFTNELTYERSVSYAKGRTGGHLHKARLTDEYDTWTCMLLGVQTELSVIMLDLNMILGMAQGLNLIFGWDLFSCVFLAATGVVFHILLAVLLDIEKAKFLGQFVAGFVLVSFILGMLINQPEIPFSMNGILIRLSGESAFVLMSLLGANLVPHNFYLHSSIVQWHQGPANISKNALCHNHFFAILCVFSGLYLVNNMLMTSSANEFYSTGHVLQTFQDALSPMEQVLRNPIALLGFLLLLFLANQITALSWSLGGEVVVQGFLKLDIPGWLHYATIRVITVLPALYFVWSSGAEGMYQLLLFTQVLVALQLPSLVIPLFRVATSRSIMGVHKISQFLELLALIIFIGMLGLNIVFVVEMMFGNSDWASDLRWNVGSGVSISYLVLLTTSVSSLCFMLWLAATPLRSVSVRLDSKTWNWDMPNALPNPPIISEKSYLTETRCREDDEPMHIQEPTPAVTKTLEYSDVSHPSFHPALPKSVMEPEFHVNVARKNHSDMLASTSESEVVTTVINEISHSQLEDTKTITMETNNPIEKTMEVEGDLNVERDDDDDGDSWEAEEPSGFVLANVPSSTSDGPASFRCLNGKSDEGGNSFGSLSRIEGLGRAARRQLAAVLDEFWGQLFDFHGHITQEAKANKIDVLLGVGVDLRPTCFLQKVDVCRKDYSEYSGSLGGRVSNTSANSDLYDSSKQPLMQCNSESGLQRSTSSMRPDHIQLLDAYVQNSSHNLLDSGERRYSSVRNLHSSETRDYQPATIHGYQTASYLSRLGKDGDSANLNGPVDLSSLKSPSIVNAKYRESLAFALGKRLCSGPSVGQPPGFPKVAITRDCQLQSLRSYNDFYPSGSADNTLNSVNTKKYHSLPDISGYFFPYRSDLNAYVPDKNAPWDGVCGTSYERSPYSNSGTRTGSHLAFNELSSSKAYNEALSSQLSSGFDAGSARSRLPCEQFGPEKNSNIVMEGVGNRPNAIVQETMDIEKKLLLSVRLCIVKLLKLEGSEGLFRKNGGADEDLIDCVASREKVVCEFETRETSQVNHVGEAHYCLSDRKLGFSSSPVPYCGEGCIWKTDLIISFGVWCIHSILNLTLVESRPELWGKYTYVLNRLQGIIDPAFFKPRSPLAPCFCLQVLPAHQRKLNPHLSNEMLLPTAKPSRGKCTTASALLELIKDVELAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPPGTNEGTGSRKTPRKYLTTSSICIDRIGA 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02516 1410 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 71 578 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 Pfam Natural resistance-associated macrophage protein 203 511 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 Pfam Natural resistance-associated macrophage protein 107 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 MobiDBLite consensus disorder prediction 1373 1396 - -
Vimu6g02516 1410 PIRSF EIN2 70 1402 IPR017187 GO:0009873
Vimu6g02516 1410 PRINTS Natural resistance-associated macrophage protein signature 319 342 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 PRINTS Natural resistance-associated macrophage protein signature 481 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 PRINTS Natural resistance-associated macrophage protein signature 217 243 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 PRINTS Natural resistance-associated macrophage protein signature 421 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vimu6g02516 1410 MobiDBLite consensus disorder prediction 1381 1396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02516 Vimu-Chr6 21909548 21920586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02516 70 1397 Miscellaneous Gene Families AT5G03280 46.861 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02516 K14513 - gmx:100813034 1902.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02516 6 21909548 21920586 Vimu6g02516 6 21909548 21920586 ECH
Vimu6g02516 6 21909548 21920586 Vimu3g01219 3 21044938 21050919 PCT