LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g01219	ATGGAAGCAGAGACATTGAATGCTAATCACCCTCCCAGTTTGCTTCACCGGTCTCTTCCTGCTATTGTGCCTATGCTTTTGATTTCAATAGGATATGTTGACCCTGGAAAGTGGGTGGCAATTGTTGAAGGAGGTGCACGATTCGGATTTGATTTGATGGCTTTCGCACTTATCTTCAACTTTGCTGCAATCTTCTGTCAATACATATCAGCAAAGATTGGTGTTGTCACAGGAAAAGATCTTGCTCAGATTTGCAGTGATGAGTACGACAACTGGACATGCATGCTCCTTGGAGTTCAAGCAGAACTTTCGGTGATCATGCTAGACCTTAACTTGATATTGGGCATGGCACATGGATTAAATATTCTCTTTGGGTGGGACTTGTTCACTTGTGTCTTTTTAACTGCTACTGGCGCTGTTTTCCATCTCCTTCTTTTTGTCCTCCTTGACATTGAGAAGGCCAAGATCGTGGGCCTGTTTGTGTCATGTTTTGTCTTTCTTACATTTGTATTTGGAACACTCCTTAATCAACCAGACATTCCATTATCCATTAATGGAATATTAACAAAGTTGAGTGGGGAGAGTGCATTTGTGCTGATGAGTCTTTTAGGAGCAACTCTTGTGCCTCACAACTTCTACCTTCATTCCTCTATTGTACAGTGGCATCAGGGATCAACTACTATTTCTAAGGATGCTTTATGTCATAACCATTTTTTGGCCATCATATGTGTCTTCAGTGGCCTTTATTTGGTAAATAATGTGCTGATGAATGCTGGAGCAAATGAGTTCTACAGTATGGGTCTTGTTTTAACTACATTTCAGGACGCATTATCTCCAATGGAACAGGTGTTACGTAGTCCAATAGCCATGCTTGCTTTTTTACTCATTCTGTTTTTCGCAAACCAAACAACAGCGTTAACTTGGGGTTTTGGTGGAGAAGTAGTTGTGCATAATTTCTTAAAATTGGACATTCCAGGTTGGCTTCATTATGCTACAATTAGAGTAGTTGCTGTTTTGCCCGCCCTTTATTGTGTTTGGAGTTCAGGAGCTGAAGGGATGTATCAACTACTTATATTCACTCAGATTGTGGTAGCTTTGCAACTTCCATCTTCTGTGATCCCCCTTTTTCGGATAGCGTCATCTAGATCAATAATGGGGGTACACAAGATCCCTCAATTTGTGGAATTTTCGGCCTTGATCATATTTATTGGGATGCTTGTCTTGAATATTGTCTTTGTTGTAGAAATGATATTTGGTAGTAGTGATTGGGTGGGCAATTTGAAATGGAACGTGGGGAATGGTGTCTCTCTCTCATATTTGGTTCTTCTTTGCACTGCTTTTGCATCATTCTGTTTGATGCTTTGGTTAGCTGCCACACCATTAAAATCTGCAAGCATTCAATTAGATGAAGCATGGAACTGGGACATGCCACAGGCTACACAAGAACCACGGATTGATAATAAGGAAACAGATTTAAATGAAACAAGATATCATGGAGATGCATCTGTTCAGGTGATGGAACCATCACCAGCTCTAACAAGGACCCTGGAATACTCAGAATTACCTGTTGCAGGTTTTCATCATGAACTACCTGAAACTATTATGGAGTCTGATGTTCCAGTGACTACTGTAAGAGAGACTCATTCATTTACATCATTTCCTTGCTCCCCAACACCTGTTGTTAGGGAATCAACTTCAACTTCAGAATCAGAGGCAGTGCCAGCTGCAAGTACTGATACTTCTAGTATTAGTTTGGGAGATGCCAAAACTTTAAAAACAGAAATTAGTGCTCCTGTTGAGAAAACTGTAGAAGTTGAGGGAGATTCAAATGCCGAAAGGGATGACGATGATGGAGATTCATGGGAAACTGAAGAAATATCAAAAGTGGTCTCACTTGCCCCATCTTCAGCACCGGATGGCCCAGCATCATTCAGGAGTCTTAGTGGGAAAAGTGATGATGGAGGTAATAGCATTGGAAGTCTTTCAAGATTAGCAGGTTTAGGGCGTGGTGCAAGACGTCAACTAGCTGCTATTCTTGACGAATTCTGGGGGCAGCTTTATGATCTTCATGGTCAATTTACCCAGGAAGCTAAGGCTAAGAAACTTGATATTTTACTGGGAGTGGATTCAAGACTCACTAGTTCTTTGCAGAAAATGGATACATGTGGAAAGGAACATTCTGGGCACTGGATGTCTGCAGGAAGTAGACAGGAAAATCTGATCAGCTTCGCTCCATATGACTCGCCCAAGCAGCATACGATGCAAAGTAATTTTGAGCCTTCCTATGAGCCTCGAAGGAGTTATCACTCAGTGAGAACAAATCCCGTGCAGTTTATGGATGAATATGTTCAGACTTCCAACCGCAATGTCCTCAGTGCTGGTGAAAGGCGTTATTTCAGTGTGCGCAATCTACCTACATCCGGGTCCTGGGATAATCCGCCACCTACTGTACATGGTTATCAGGTTGCATCATATATTAATCAGGTTGGTAAAGAGACGAATTCTGATAACTTAAATGATCTGATGGAATCCCCTTCCATGGGTATTATGAACAACTACAGGAATTCTATTAGTAATACAAACAACTACAGGAATTCTATCGCTCTTGCTATGGGGCAAAAGTTGCAAAATGGTTCAGGTTTAAGCCAACCCCCAGGCTTCCACAACATTGCTGTCCCTAAGAATAGCCAATTGCCATCTGAGAGGTCCTGTTATGGACCTGCGGATAATTCAGTCAGCTCAGTTAATGCTAAGAAGTACCACAGTTTGCCAGACATTTCAGGATATGCCATCCCTCACAGGGATGCTTACGTATCTGATAAGAGTACTATGTGGGATGGTTCTGTTGGTGGCTATAGATCTTCTGCGGGTAGGACTCATCATGAACAGTCATTATTTTCAAATTCCGGATCAAGGACAGCAGCTCCTTTAGCCTTCGATGTACTCTCTCCATCAAAAGTCTACACTAATGTACTTTCTTCCCAGTTGAGTTCTCGTTTGGGTACTGGATCCCTCTGGTCCAGACAGCCTTTCGAGCAGTTTGGGGTGGATGATAAAGTTCATAATGCTGCAACAGAAGATGTTGGAAATAGACCTAGTGCAATTACTCAAGAAACTACTTCGGTTGTGGATGTAGATGGCAGATTTCTTCAATCTTTTAGAAGTTGTATTTTGAAACTCTTAAAACTGGAAGGTTCTGATTGGCTGTTTAAACAGAATGATGGGGCTGATGAAGATTTGATTGACCGGGTTGCTGCTAGGGAAAAATTTTTCTCTGAAGTTGAAACTACAGAGATGAATAATCCTATGGGAGAGGGTCGCTATTTTTCTTCTGATGGGAAGTCTTTATCTTCAATGAAGAATAATGAGGCAAATTGGTCTAATTTTTCTGTGACCTCAATCCCCAACTGTGGGGATGGATGTGTTTGGAGAGCAGACATAATTATAAGCTTTGGGGTGTGGTGTATCCATCGTGTTCTTGACCTCTCACTGATGGAGAGCCGACCAGAGCTGTGGGGCAAGTACACTTATGTACTTAATCGCTTGCAGGGTATAATTGATCTGGCTTTCTCCAAGCCTCGTAGTCCCATGACAGCATGCTTTTGCCTTCAAGTACCCATGACGTACCAGATAAAATCAAGCTCACCTCCTTCCAACGGGATGCTGCCACCAGCTTCAAAACCAGGCCGCGGAAAATGCACCACTGCGTCTGTGGTGTTTGAGATGGTGAAGGATGTGGAGATAGCAATCTCTAGCCGAAAAGGTCGTACTGGAACTGCTGCTGGTGACGTAGCCTTCCCAAAGGGAAAGGAGAATTTAGCATCTGTTCTCAAACGGTACAAGCGTAGATTATCCAACAAACCAGTTGGCACTCAAGAAGGGATTCGCAAGATTCCCACATCAGCACCATACAACTCTTAG	3921	0.4249	MEAETLNANHPPSLLHRSLPAIVPMLLISIGYVDPGKWVAIVEGGARFGFDLMAFALIFNFAAIFCQYISAKIGVVTGKDLAQICSDEYDNWTCMLLGVQAELSVIMLDLNLILGMAHGLNILFGWDLFTCVFLTATGAVFHLLLFVLLDIEKAKIVGLFVSCFVFLTFVFGTLLNQPDIPLSINGILTKLSGESAFVLMSLLGATLVPHNFYLHSSIVQWHQGSTTISKDALCHNHFLAIICVFSGLYLVNNVLMNAGANEFYSMGLVLTTFQDALSPMEQVLRSPIAMLAFLLILFFANQTTALTWGFGGEVVVHNFLKLDIPGWLHYATIRVVAVLPALYCVWSSGAEGMYQLLIFTQIVVALQLPSSVIPLFRIASSRSIMGVHKIPQFVEFSALIIFIGMLVLNIVFVVEMIFGSSDWVGNLKWNVGNGVSLSYLVLLCTAFASFCLMLWLAATPLKSASIQLDEAWNWDMPQATQEPRIDNKETDLNETRYHGDASVQVMEPSPALTRTLEYSELPVAGFHHELPETIMESDVPVTTVRETHSFTSFPCSPTPVVRESTSTSESEAVPAASTDTSSISLGDAKTLKTEISAPVEKTVEVEGDSNAERDDDDGDSWETEEISKVVSLAPSSAPDGPASFRSLSGKSDDGGNSIGSLSRLAGLGRGARRQLAAILDEFWGQLYDLHGQFTQEAKAKKLDILLGVDSRLTSSLQKMDTCGKEHSGHWMSAGSRQENLISFAPYDSPKQHTMQSNFEPSYEPRRSYHSVRTNPVQFMDEYVQTSNRNVLSAGERRYFSVRNLPTSGSWDNPPPTVHGYQVASYINQVGKETNSDNLNDLMESPSMGIMNNYRNSISNTNNYRNSIALAMGQKLQNGSGLSQPPGFHNIAVPKNSQLPSERSCYGPADNSVSSVNAKKYHSLPDISGYAIPHRDAYVSDKSTMWDGSVGGYRSSAGRTHHEQSLFSNSGSRTAAPLAFDVLSPSKVYTNVLSSQLSSRLGTGSLWSRQPFEQFGVDDKVHNAATEDVGNRPSAITQETTSVVDVDGRFLQSFRSCILKLLKLEGSDWLFKQNDGADEDLIDRVAAREKFFSEVETTEMNNPMGEGRYFSSDGKSLSSMKNNEANWSNFSVTSIPNCGDGCVWRADIIISFGVWCIHRVLDLSLMESRPELWGKYTYVLNRLQGIIDLAFSKPRSPMTACFCLQVPMTYQIKSSSPPSNGMLPPASKPGRGKCTTASVVFEMVKDVEIAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGTQEGIRKIPTSAPYNS	1306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g01219	1306	MobiDBLite	consensus disorder prediction	555	652	-	-
	Vimu3g01219	1306	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	14	466	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PRINTS	Natural resistance-associated macrophage protein signature	301	320	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PRINTS	Natural resistance-associated macrophage protein signature	361	380	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PRINTS	Natural resistance-associated macrophage protein signature	97	123	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PRINTS	Natural resistance-associated macrophage protein signature	199	222	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PRINTS	Natural resistance-associated macrophage protein signature	329	346	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	Pfam	Natural resistance-associated macrophage protein	38	390	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vimu3g01219	1306	PIRSF	EIN2	1	1304	IPR017187	GO:0009873
	Vimu3g01219	1306	MobiDBLite	consensus disorder prediction	555	589	-	-
	Vimu3g01219	1306	MobiDBLite	consensus disorder prediction	1285	1306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g01219	Vimu-Chr3	21044938	21050919	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g01219	1	1297	Miscellaneous Gene Families	AT5G03280	51.353	0.0	1218

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g01219	K14513		-	gmx:100801190	2202.56

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu3g01219	3	21044938	21050919	Vimu3g01219	3	21044938	21050919	ECH
	Vimu6g02516	6	21909548	21920586	Vimu3g01219	3	21044938	21050919	PCT