Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02498 ATGGGAGAGAAAAAAGAGAAGGCGAAGAATGAGGCCGGTAAGACGCCTGACTCGGGAGGAAAGCAAAAGGACGTACTCACCCCTGTCGTTTTGAGACTCGAAATGCATTGCGAGGGATGCGTCAAAAAGATCAAACGCGCCGTGCGCAATTTCGACGGTATTACCCCCATTATTCAGATCTTGATCGAGCGTGTGGAAGACGTTAAGGCCGATCTATTAGGTAACAAGTTAACGGTTATTGGGAAGATCGACTCTTCCGTAGTGCGAGATAAACTAGCGGACAAGACTAGGAAGAAGGTAGAAATTATTTCTCCTCAACCGAAGAAAGATTCCGGAGCCGCCAGTAAACCACCGGAGAAAAAGGTGGAAGAGAAAAAAACAGAAGAGAAGAAACCGGCAGATAAGAAAACCGAAGAAAAAACTCCGAAACAGAGCACGGTGGTGTTGAAGATCCGATTGCACTGTGACGGTTGCATTCAGAAAATTCGAAAGATTATTCTCAAGATCAAAGGTGTTGAATCGGTTAAAATAGAGGGAGGGAAAGACTTGGTGACGGTAAATGGCACAGTGGAGGTGAAAGAATTGGTAGCGTATCTGAACGAGAAACTGAAACGGAACGTTGAGGTGGTCCCGCTGAAGAAAGAGGGTGAAAAGAAAGAGAATAAGAAGGAAGAGAAAGAGAAGGGGAAGGAGAAGAAAGAAGGTGGCGGTGGTGTTAAAAAAGATGGTGGAGAAAAAGAAGAGGGTGTATCGAAGGTTGAGGTTAACAAAATGGAGCACTTCGGGTACGTTTACCCACCTCCTCCTATGTACTGGTACGACGGATATGCACCAGGTCAAAGTAGTACTAGTGGTAGTGGTGGTGGTGGTTACACGGTGGGGGTTCATTCAGGGTATGATGGTAATTACGGGAATTACCATGACCAATACCATAATGGGTATGGGAACCAAGGGTACATGGTACAGCAACCACCCCCACCCCCGTTCTACTTGAACCCTTATCATCCTCCACCGCAGATGTTCAGTGATGAGAACCCCAATGCATGTTTCGTGATGAAGTTGCATCTTGTCACCACCACCACCACCGTACCACCGTGCCACCATGGCGTTTCTCCCCAACAGTACAATTCACAACGTCCAATTCCACCGACGGTGACTCATGCCAACGAAGAACCAGTGAATCAGTTGCGTTCCCTTTTTTAG 1203 0.4697 MGEKKEKAKNEAGKTPDSGGKQKDVLTPVVLRLEMHCEGCVKKIKRAVRNFDGITPIIQILIERVEDVKADLLGNKLTVIGKIDSSVVRDKLADKTRKKVEIISPQPKKDSGAASKPPEKKVEEKKTEEKKPADKKTEEKTPKQSTVVLKIRLHCDGCIQKIRKIILKIKGVESVKIEGGKDLVTVNGTVEVKELVAYLNEKLKRNVEVVPLKKEGEKKENKKEEKEKGKEKKEGGGGVKKDGGEKEEGVSKVEVNKMEHFGYVYPPPPMYWYDGYAPGQSSTSGSGGGGYTVGVHSGYDGNYGNYHDQYHNGYGNQGYMVQQPPPPPFYLNPYHPPPQMFSDENPNACFVMKLHLVTTTTTVPPCHHGVSPQQYNSQRPIPPTVTHANEEPVNQLRSLF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02498 400 ProSiteProfiles Heavy-metal-associated domain profile. 26 100 IPR006121 GO:0046872
Vimu6g02498 400 ProSiteProfiles Heavy-metal-associated domain profile. 144 207 IPR006121 GO:0046872
Vimu6g02498 400 Gene3D - 143 217 - -
Vimu6g02498 400 SUPERFAMILY HMA, heavy metal-associated domain 28 94 IPR036163 GO:0046872
Vimu6g02498 400 Pfam Heavy-metal-associated domain 31 93 IPR006121 GO:0046872
Vimu6g02498 400 Pfam Heavy-metal-associated domain 150 207 IPR006121 GO:0046872
Vimu6g02498 400 MobiDBLite consensus disorder prediction 98 143 - -
Vimu6g02498 400 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 4 352 IPR044594 GO:0046872
Vimu6g02498 400 MobiDBLite consensus disorder prediction 369 400 - -
Vimu6g02498 400 Coils Coil 212 234 - -
Vimu6g02498 400 MobiDBLite consensus disorder prediction 1 18 - -
Vimu6g02498 400 MobiDBLite consensus disorder prediction 216 250 - -
Vimu6g02498 400 MobiDBLite consensus disorder prediction 113 143 - -
Vimu6g02498 400 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02498 400 CDD HMA 35 98 IPR006121 GO:0046872
Vimu6g02498 400 SUPERFAMILY HMA, heavy metal-associated domain 145 205 IPR036163 GO:0046872
Vimu6g02498 400 Gene3D - 24 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02498 Vimu-Chr6 21726417 21729888 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02498 - - pvu:PHAVU_001G179100g 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02498 6 21726417 21729888 Vimu6g02498 6 21726417 21729888 ECH
Vimu6g02498 6 21726417 21729888 Vimu3g01269 3 22372552 22374024 PCT