Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01269 ATGGGAGAGCAAAAGGAGCAGCCAAAGAATGAAACAGAGAAGAAGCCAGAGGATGGAGCACCCAAGAAAGACGATGGACCCGCCCCTGTCGTTTACAAACTCGACTTGCATTGCGAGGGATGCGTCAAGAAGATTAAACGCACCGCTCGCCACTTTCCAGGTGTGGAAACCGTTAAGGCAGATCTATCGTCTAACAAAGTGACCGTTACCGGGAAAATGGACGCCGAGAAGCTTCGAGAGAAGTTCGCCGAGAGAACCAAGAAGAAGGTTGATTTTGTCACACCTCCGCCGAAGAAAGAGGCCGCCGCAGAAAAACCGCCGGAAAAGAAGGCCGAAGAGAAGAAACCTGAGGAGAAAAAACCAGAAGAAAAGCCTAAAGAGACCACGGTGGTTTTGAAGATCAAACTACACTGTGACGGTTGCATTGCGAAAATCCGAAGAATCATTCTCAGGTTCAAAGGTGTTCAGTCGGTGAACCTTGACGGAAGCAAGGACTTGGTGACGGTGAAGGGAACGATGGACGTGAAGGAGATGGTGCCGTACCTGAACGAGAAGCTTAAGCGAAACGTGGAAGTGGTGCCTCCGAAGAAAGAGGAGGAGAAGAAAGAGAAAGCAGACGGCGGAGAGAAGAAAGAGAAAGCCGATGGCGGAGAGAAGAAAGAGAAAGACGGCGGCGGTGAGAAGAAAGAGAAAGACGCTGCGGCGGAAGCGAAGGCAGAGGTTAACAAAATGGAATTCATGTACCCGATCCCACCTCCCTCGTTCTGGTACCAAGGAGGACAGTTTCCCGGTCAAACAAGTTACGCTATGGAGGTTCAACCATCCTATGGTATTAACAATCATTACGTGGAGCAAGGGTACGTGAACCATGGTTATCCTATGCAGCCGCCTCTACCGTATTACATGCACCCTAACGCTCCTCCTCCGCAGATGTTCAGCGATGAGAACCCGAATGCCTGTTCCATCATGTGA 972 0.5041 MGEQKEQPKNETEKKPEDGAPKKDDGPAPVVYKLDLHCEGCVKKIKRTARHFPGVETVKADLSSNKVTVTGKMDAEKLREKFAERTKKKVDFVTPPPKKEAAAEKPPEKKAEEKKPEEKKPEEKPKETTVVLKIKLHCDGCIAKIRRIILRFKGVQSVNLDGSKDLVTVKGTMDVKEMVPYLNEKLKRNVEVVPPKKEEEKKEKADGGEKKEKADGGEKKEKDGGGEKKEKDAAAEAKAEVNKMEFMYPIPPPSFWYQGGQFPGQTSYAMEVQPSYGINNHYVEQGYVNHGYPMQPPLPYYMHPNAPPPQMFSDENPNACSIM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01269 323 MobiDBLite consensus disorder prediction 101 127 - -
Vimu3g01269 323 MobiDBLite consensus disorder prediction 193 236 - -
Vimu3g01269 323 Gene3D - 27 90 - -
Vimu3g01269 323 CDD HMA 36 90 IPR006121 GO:0046872
Vimu3g01269 323 Pfam Heavy-metal-associated domain 35 84 IPR006121 GO:0046872
Vimu3g01269 323 Pfam Heavy-metal-associated domain 133 191 IPR006121 GO:0046872
Vimu3g01269 323 CDD HMA 131 171 IPR006121 GO:0046872
Vimu3g01269 323 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 10 323 IPR044594 GO:0046872
Vimu3g01269 323 Gene3D - 123 200 - -
Vimu3g01269 323 ProSiteProfiles Heavy-metal-associated domain profile. 27 90 IPR006121 GO:0046872
Vimu3g01269 323 ProSiteProfiles Heavy-metal-associated domain profile. 127 198 IPR006121 GO:0046872
Vimu3g01269 323 MobiDBLite consensus disorder prediction 87 127 - -
Vimu3g01269 323 MobiDBLite consensus disorder prediction 1 30 - -
Vimu3g01269 323 SUPERFAMILY HMA, heavy metal-associated domain 127 189 IPR036163 GO:0046872
Vimu3g01269 323 SUPERFAMILY HMA, heavy metal-associated domain 31 83 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01269 Vimu-Chr3 22372552 22374024 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01269 - - gmx:547884 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01269 3 22372552 22374024 Vimu3g01269 3 22372552 22374024 ECH
Vimu6g02498 6 21726417 21729888 Vimu3g01269 3 22372552 22374024 PCT