Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02481 ATGGCCCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGCTCTATGGGTTTTTACAAAGGGTTTCGAAATCTCTGGGGCCCTCAGCACCAAAGTCTAGACCAAAATGCATTAACGATCTGGCTTGATAGAACCTCAGGAAGTGGCTTCAAGTCGGTAAGGCCATTTCGATCCGGTTACTTTGGGGCTTCCATTAAGGTCCAACCTGGCTATACTGCAGGAGTTATCACAGCTTTCTATGTAAGATATGGCCTCGAGAGATCATATAATAAAGTGTTCTCGCTCTCAAACAATGAAGCACATCCTGGTTTCCATGATGAAGTGGACATCGAGTTTCTTGGGACAACATTTGGAAAGCCTTACACTTTGCAGACGAATGTTTATATAAGAGGGAGTGGAGATGGGAGAATTATAGGCAGAGAGATGAAGTTCCATCTCTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATTCTGTGGAGTCCCAAGGAAATAATATTCCTAGTGGATGATGTGCCAATAAGAAGGTACCCGAGGAAGAGTGGTGCAACGTTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCTTCATCATGGGCAACTGAAGATGGAAAGTACAAAGCTGATTACAAATACCAACCCTTTGTGGCAAAGTATTCGAACTTCAAAGCTAGTGGTTGCTCAGCCTATGCACCACGGTGGTGCCACCCAGTTTCAGCCTCACCATATAGGTCTGGTGGGTTGACAAGACAACAAAACAGAGCCATGAGATGGGTGCAGAGATACCTGATGGTTTATAACTACTGTCAAGACCCCAAGAGAGATCACAGTCTAACACCTGAGTGTTGGGGTTGA 891 0.4512 MAPSSNAYWPPSPGYWPSSKFSSMGFYKGFRNLWGPQHQSLDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKVQPGYTAGVITAFYVRYGLERSYNKVFSLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSGATFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFVAKYSNFKASGCSAYAPRWCHPVSASPYRSGGLTRQQNRAMRWVQRYLMVYNYCQDPKRDHSLTPECWG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02481 296 PIRSF EndGlu_transf 13 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu6g02481 296 Pfam Glycosyl hydrolases family 16 28 223 IPR000757 GO:0004553|GO:0005975
Vimu6g02481 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 256 294 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu6g02481 296 FunFam Xyloglucan endotransglucosylase/hydrolase 13 295 - -
Vimu6g02481 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 231 IPR000757 GO:0004553|GO:0005975
Vimu6g02481 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 23 294 IPR044791 GO:0004553
Vimu6g02481 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 295 IPR013320 -
Vimu6g02481 296 Gene3D - 6 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02481 Vimu-Chr6 21560953 21562695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02481 1 294 Glycoside Hydrolase AT3G44990 63.390 7.78e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02481 K08235 - gmx:100796698 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02481 6 21560953 21562695 Vimu6g02481 6 21560953 21562695 ECH
Vimu6g02481 6 21560953 21562695 Vimu3g01475 3 27747848 27749596 PCT