Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02470 ATGTTTAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCCTCCTTCGGTCCGCCGGTGACGGCCGCTGCTCCGGAGGTGGTGGTGCCGCCGCCTACGGGGACCATAGAGCCGCTGCCGCTGTTCCGCGACGTGCCTGTGTCGGAGCGGCAGACCCTGTTCATTCGGAAGCTTCAGATATGCTGTCACGTGCTGGACTTCTCGGACACGCTGAAGAGCATTCGCGAAAAGGAAATCAAGAGGCAGACGCTGATGGAGCTCGTGGATTTCATACAATCGGGTTCGGGGAAGATAACAGAGACTTGCCAGGAGGAGATGATCAAAATGGTGGCCGTCAATATCTTCCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAACCCACCGATCCGGAGGAAGAGGAGCCGTGCCTCGATCCCGCGTGGCCGCACCTTCAGCTTGTCTACGAGCTTCTCCTCAGATACATCGTTTCCTCTGATACTGACACAAAGGTTGCGAAACGGTACATTGATCATTCTTTTGTCCTCAAACTGCTTGATTTGTTTGACTCTGAGGACCCCCGTGAGCGTGAGTACCTAAAAACCATATTACATCGCGTGTACGGGAAATTCATGGTTCATCGCCCCTTTATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGCGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGCATTATCAATGGCTTTGCTCTCCCGATGAAAGAAGAACATAAGCTGTTTCTATCTAGGGCGCTTCTGCCTCTACATAAGCCCAAGCCGGTTGCGGTGTATCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTTCAAGCTCGCGGATGCAGTTATTAGGGGCTTGTTGAAGTATTGGCCCGTAACTAATTGCCAGAAGGAGGTTCTCTTTCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACGCAAGCTGCGGAATTCCAACGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTCGTGTGGATTTGTTTTTCATCACCTTTGCTGATGCAAGCCTTTTTTCAACATTACCTTTGGGTATCCGGGTTATGAATGTGCAATTTGTTCAACTGTTTCGTTGTTTATGA 1200 0.5167 MFKRIMKGGQKKPSKTDPSDPSSFGPPVTAAAPEVVVPPPTGTIEPLPLFRDVPVSERQTLFIRKLQICCHVLDFSDTLKSIREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVAVNIFRCLPPASHENTGQEPTDPEEEEPCLDPAWPHLQLVYELLLRYIVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLSRALLPLHKPKPVAVYHQQLSYCIAQFVEKDFKLADAVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQVARCLNSSHFQVRVDLFFITFADASLFSTLPLGIRVMNVQFVQLFRCL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02470 399 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g02470 399 PIRSF PP2A_B56 21 388 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g02470 399 Gene3D - 49 380 IPR011989 -
Vimu6g02470 399 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 47 364 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g02470 399 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 36 364 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu6g02470 399 FunFam Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit 49 264 - -
Vimu6g02470 399 SUPERFAMILY ARM repeat 59 365 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02470 Vimu-Chr6 21492977 21494176 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02470 K11584 - gmx:100798308 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02470 6 21492977 21494176 Vimu6g02470 6 21492977 21494176 ECH
Vimu6g02470 6 21492977 21494176 Vimu3g01206 3 20520348 20526914 PCT